TCONS_00012782-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012782-protein
Unique NameTCONS_00012782-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012782-protein ID=TCONS_00012782-protein|Name=TCONS_00012782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MEYEIPSGYNSSDMDIYPIESNTLPPMTNLADIRTNNSNLNSVSNEQYEE
EKKNCFRVFDGWSTEDQIDFIEDILLRMTHFQHGHINTFLKPMLQRDFIS
VLPGKGLEPVAEKILSYLDDKSLRSAELVCREWRRVIADGMLWKKLIQRK
VMHDSLWCGLGERRGWIDSLRKPSQKTDHVYFRTLYPKIVADINRLESNW
RCGKHGLLKIHCRSENIKGVYCLQYDDDKIVSGLRDNTIKLWNRKSLDCT
QVLHGHTGSVLCLQYDYRIIVTGSSDATVRIWDVNTGEMLNTLIHHCEAV
LHLRFQDGIMITCSKDRSIAVWDLNSPTDISLRRVLVGHRAAVNVVDFDD
KYIVSASGDRTIKVWNTSTCEFVRTLSGHRRGIACLQYRGTLVVSGSSDF
TIRLWDIEMGNCLRTLEGHEELVRCIRFNNKHIVSGAYDGKIKVWDLQAA
LDTRKPPNALCIRTLMEHTGRVFRLQFDEFQIISSSHDDTILIWDFLDGQ
QDNLTARYNATNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007175XLOC_007175Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012782TCONS_00012782Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR021977Beta-TrCP_D
IPR001680WD40_repeat
IPR001810F-box_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 270..284
score: 39.11
coord: 433..447
score: 39.13
coord: 393..407
score: 42.89
IPR021977D domain of beta-TrCPSMARTSM01028Beta-TrCP_D_2coord: 56..95
e-value: 7.8E-18
score: 75.2
IPR021977D domain of beta-TrCPPFAMPF12125Beta-TrCP_Dcoord: 58..95
e-value: 2.7E-20
score: 71.9
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 329..366
e-value: 9.1E-7
score: 38.5
coord: 286..323
e-value: 0.0014
score: 27.9
coord: 458..495
e-value: 2.2E-4
score: 30.5
coord: 206..243
e-value: 0.51
score: 18.9
coord: 369..406
e-value: 2.8E-6
score: 36.8
coord: 409..446
e-value: 2.8E-8
score: 43.5
coord: 246..283
e-value: 1.4E-7
score: 41.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 461..495
e-value: 0.19
score: 12.6
coord: 410..446
e-value: 7.9E-7
score: 29.6
coord: 333..366
e-value: 5.0E-4
score: 20.7
coord: 372..406
e-value: 4.0E-5
score: 24.2
coord: 248..283
e-value: 7.5E-6
score: 26.5
coord: 216..243
e-value: 0.031
score: 15.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 293..332
score: 9.606
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 336..375
score: 13.449
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 416..455
score: 13.516
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 253..292
score: 15.354
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 465..504
score: 9.907
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 376..415
score: 13.516
IPR001810F-box domainSMARTSM00256fbox_2coord: 107..146
e-value: 0.001
score: 28.3
IPR001810F-box domainPFAMPF12937F-box-likecoord: 112..147
e-value: 2.3E-10
score: 40.1
IPR001810F-box domainPROSITEPS50181FBOXcoord: 110..146
score: 9.921
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 91..175
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 341..402
e-value: 9.5E-23
score: 80.2
NoneNo IPR availableGENE3D1.10.10.670coord: 403..442
e-value: 6.8E-18
score: 63.9
coord: 443..512
e-value: 2.4E-11
score: 42.9
coord: 319..340
e-value: 2.6E-5
score: 23.5
NoneNo IPR availableGENE3D2.40.10.120coord: 257..278
e-value: 2.2E-4
score: 20.2
NoneNo IPR availableGENE3D2.80.10.50coord: 213..256
e-value: 4.0E-9
score: 36.2
NoneNo IPR availableGENE3D2.80.10.50coord: 279..318
e-value: 2.4E-15
score: 55.9
NoneNo IPR availableGENE3D1.20.1280.50coord: 85..204
e-value: 4.2E-16
score: 58.5
NoneNo IPR availableCDDcd00200WD40coord: 218..495
e-value: 8.1472E-74
score: 236.848
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 433..447
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 270..284
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 353..367
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 482..496
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 310..324
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 393..407
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 213..504
score: 59.294
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 214..495

Blast
[Close]
BLAST of TCONS_00012782-protein vs. Swiss-Prot (Human)
Match: FBW1A (F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1)

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 339/455 (74.51%), Postives = 391/455 (85.93%), Query Frame = 0 
Query:   48 YEEEKKNCFRVFDGWSTEDQIDFIEDILLRMTHFQHGHINTFLKPMLQRDFISVLPGKGLEPVAEKILSYLDDKSLRSAELVCREWRRVIADGMLWKKLIQRKVMHDSLWCGLGERRGWIDSL--RKP--SQKTDHVYFRTLYPKIVADINRLESNWRCGKHGLLKIHCRSENIKGVYCLQYDDDKIVSGLRDNTIKLWNRKSLDCTQVLHGHTGSVLCLQYDYRIIVTGSSDATVRIWDVNTGEMLNTLIHHCEAVLHLRFQDGIMITCSKDRSIAVWDLNSPTDISLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLSGHRRGIACLQYRGTLVVSGSSDFTIRLWDIEMGNCLRTLEGHEELVRCIRFNNKHIVSGAYDGKIKVWDLQAALDTRKPPNALCIRTLMEHTGRVFRLQFDEFQIISSSHDDTILIWDFLD 498
            YE+EK+ C + F+ WS  DQ++F+E ++ +M H+QHGHIN++LKPMLQRDFI+ LP +GL+ +AE ILSYLD KSL +AELVC+EW RV +DGMLWKKLI+R V  DSLW GL ERRGW   L   KP       + ++R LYPKI+ DI  +ESNWRCG+H L +IHCRSE  KGVYCLQYDD KIVSGLRDNTIK+W++ +L+C ++L GHTGSVLCLQYD R+I+TGSSD+TVR+WDVNTGEMLNTLIHHCEAVLHLRF +G+M+TCSKDRSIAVWD+ SPTDI+LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL+GH+RGIACLQYR  LVVSGSSD TIRLWDIE G CLR LEGHEELVRCIRF+NK IVSGAYDGKIKVWDL AALD R P   LC+RTL+EH+GRVFRLQFDEFQI+SSSHDDTILIWDFL+
Sbjct:  130 YEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 584
The following BLAST results are available for this feature:
BLAST of TCONS_00012782-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBW1A0.000e+074.51F-box/WD repeat-containing protein 1A OS=Homo sapi... [more]
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