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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00012639-protein ID=TCONS_00012639-protein|Name=TCONS_00012639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MAFISKKTDVFLSHNWGKDSKNHQRVAKINLALQELGYETWFDDKEMYGD
IRARMAEGIKNTKCCLAFLTDEYHQKVVYGRESDNCKSEFDFASTTVPVR
AVVLDESMKNPQTWEGNIAITLKNKLYVDFSGDFEDKKYFNRQLHQLKKE
LDKILLPTSDKVVTANEDDAQPDVTEIAKLQSVMLTLFDNQNFDEAIPHL
ELLVTKQTSTLGHLHMDTLTSLNKLATCYKESEDYAKAIVAYEDLVGKQA
KTLGELHQVTLSSKCELATCLDLNKQGSKAISIFEELVEARSSLLGHHHG
DTYLARYRYACCLVDENLEKAFSLLQELVTEQKSVLGQMHKNTLYSMHSL
AFCLDKKKDFNKAISIYQDVIAKKEIVFGRTHKETLKSMINLAYSFISIK
NFDTAISAFKDMIEIQSSALGEVHKKTLSSRCSLAYTYRQKGDFDEAISI
YKDVVEKQKTVFGITNEVTISSIIRLANVFGEKGEIKIAISIL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR019734 | Tetratricopeptide repeat | SMART | SM00028 | tpr_5 | coord: 261..294
e-value: 210.0
score: 3.4
coord: 219..252
e-value: 45.0
score: 9.3
coord: 386..419
e-value: 96.0
score: 6.3
coord: 428..461
e-value: 0.69
score: 18.9
coord: 344..377
e-value: 69.0
score: 7.6 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | PFAM | PF13676 | TIR_2 | coord: 10..96
e-value: 1.1E-8
score: 35.3 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | GENE3D | 3.40.50.10140 | | coord: 4..153
e-value: 1.0E-12
score: 47.8 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | SUPERFAMILY | 52200 | Toll/Interleukin receptor TIR domain | coord: 5..145 |
| None | No IPR available | GENE3D | 1.20.58.280 | | coord: 387..409
e-value: 0.21
score: 11.0 |
| None | No IPR available | PFAM | PF13424 | TPR_12 | coord: 186..244
e-value: 4.0E-8
score: 33.3
coord: 386..456
e-value: 4.7E-9
score: 36.3 |
| None | No IPR available | PFAM | PF13374 | TPR_10 | coord: 343..382
e-value: 0.0014
score: 18.3 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 269..324
e-value: 0.31
score: 10.5 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 186..314 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 338..459 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 325..386
e-value: 2.2E-12
score: 46.6
coord: 410..489
e-value: 1.1E-11
score: 44.3
coord: 189..268
e-value: 1.1E-12
score: 47.6 |
| IPR013026 | Tetratricopeptide repeat-containing domain | PROSITE | PS50293 | TPR_REGION | coord: 386..461
score: 10.507 |
Blast
The following BLAST results are available for this feature:
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