TCONS_00012615-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012615-protein
Unique NameTCONS_00012615-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012615-protein ID=TCONS_00012615-protein|Name=TCONS_00012615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MAKKSINFNTITLQELEKIPGIGKFKAQSLVDERNHRLFKNINDLIKVEG
LTLLFLNRLQNKFDFIFDTQSPCKTNALKRKTENVDTSIDEKDNGITTPE
KKARPKYNNKCASTSSSKIVPNVENALCNRTIPSCDSPGKAVRSRLQSET
AKPPDGLPDWLNKFHDWSRDERLIALNDLIGLCDMSVVRHMMAKIEPHFQ
RDFISLLPKELALYVLSFLEPKDLSNAARTCRYWRILGEDNLLWKEKCHE
YQLFYPLSDLLEEGKVDKKASQPNEAPYKELFAYCHKLERNWRSNTLRPV
MYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGG
VWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDN
VVSGSRDGTLRVWDVMKGTHLHVLIGHAAAVRCVQYNGKYVVSGAYDYLV
KVWDVETETCLHTLTGHSNRVWLSGYFDTCLGCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007079XLOC_007079Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012615TCONS_00012615Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001810F-box_dom
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR010994RuvA_2-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 483..484
NoneNo IPR availableGENE3D2.80.10.50coord: 361..389
e-value: 3.1E-14
score: 52.7
coord: 433..484
e-value: 1.5E-15
score: 57.0
NoneNo IPR availableGENE3D2.40.50.140coord: 329..360
e-value: 4.7E-15
score: 54.5
coord: 283..328
e-value: 4.8E-8
score: 32.0
NoneNo IPR availableGENE3D1.10.10.670coord: 411..432
e-value: 2.9E-10
score: 39.4
NoneNo IPR availablePFAMPF12836HHH_3coord: 4..53
e-value: 6.5E-11
score: 42.2
NoneNo IPR availableGENE3D1.20.1280.50coord: 190..282
e-value: 2.1E-20
score: 72.3
NoneNo IPR availableGENE3D2.40.10.120coord: 390..410
e-value: 0.12
score: 11.5
NoneNo IPR availableGENE3D1.10.150.280coord: 1..68
e-value: 2.6E-11
score: 43.2
NoneNo IPR availableCDDcd00200WD40coord: 303..472
e-value: 5.8875E-54
score: 183.305
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 401..415
score: 41.4
coord: 321..335
score: 36.66
coord: 361..375
score: 37.4
IPR001810F-box domainSMARTSM00256fbox_2coord: 207..247
e-value: 1.3E-6
score: 38.0
IPR001810F-box domainPFAMPF12937F-box-likecoord: 205..248
e-value: 6.0E-12
score: 45.2
IPR001810F-box domainPROSITEPS50181FBOXcoord: 201..247
score: 11.855
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 189..290
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 337..374
e-value: 2.3E-7
score: 40.5
coord: 417..454
e-value: 5.9E-5
score: 32.5
coord: 377..414
e-value: 2.7E-10
score: 50.2
coord: 296..334
e-value: 2.2E-5
score: 33.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 378..414
e-value: 3.4E-8
score: 33.9
coord: 419..454
e-value: 1.2E-5
score: 25.8
coord: 339..374
e-value: 1.7E-4
score: 22.2
coord: 299..334
e-value: 1.8E-5
score: 25.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 424..463
score: 13.082
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 317..343
score: 10.141
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 384..423
score: 14.552
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 344..383
score: 12.647
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 361..375
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 401..415
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 441..455
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 303..471
score: 39.205
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 292..472
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 4..59

Blast
[Close]
BLAST of TCONS_00012615-protein vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 1.250e-148
Identity = 221/377 (58.62%), Postives = 271/377 (71.88%), Query Frame = 0 
Query:  114 TSSSKIVPNVENALCNRTIPSCDSPGKAVRSRLQSETAKPPDGLPDWLNKFHDWSRDERLIALNDLIGLCDMSVVRHMMAKIEPHFQRDFISLLPKELALYVLSFLEPKDLSNAARTCRYWRILGEDNLLWKEKCHEYQLFYPLSDLLEEGKVDKKASQPNEAPYKELFAYCHKLERNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIGHAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLTGHSNRVW---------LSGYFDTCL 481
            TS++ +VP          + + +  G+  R R+ S   +PP GL +WL  F  WS  E+L+AL++LI  C+ + V+HMM  IEP FQRDFISLLPKELALYVLSFLEPKDL  AA+TCRYWRIL EDNLLW+EKC E  +  PL   ++  KV K       +P+K  +   H+++ NWR   L+    L+GHDDHV+TCLQF G RIVS SDDNTLKVWSA TG  +RTLVGHTGGVWSSQ+  NI++SGSTDRTL+VWNA++GECIH L GHTSTVRC+ +H   VVSGSRD TLRVWD+  G  LHVL+GH AAVRCVQY+G+ VVSGAYD++VKVWD ETETCLHTL GH+NRV+         +SG  DT +
Sbjct:  194 TSTTGLVPCSATPTTFGDLRAANGQGQQ-RRRITS--VQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH--IKRRKVIKPGFI--HSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI 563

HSP 2 Score: 133.65 bits (335), Expect = 2.298e-33
Identity = 77/203 (37.93%), Postives = 114/203 (56.16%), Query Frame = 0 
Query:  290 RNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIG---HAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLT-----GHSNRVWLSGYFDTCLGCS 484
            R W   T + +  L GH    V C+Q+DG R+VS + D  +KVW  +T T + TL GHT  V+S Q  G  VVSGS D ++RVW+ ++G CIH L GH S    + +  + +VSG+ D T+++WD+  G  L  L G   H +AV C+Q+N  +V++ + D  VK+WD++T   +  L      G    VW     +T L C+
Sbjct:  484 RVWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 685
The following BLAST results are available for this feature:
BLAST of TCONS_00012615-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXW71.250e-14858.62F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
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