TCONS_00012606-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012606-protein
Unique NameTCONS_00012606-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012606-protein ID=TCONS_00012606-protein|Name=TCONS_00012606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
SSVSLRRCFRLRILQMAASLSAQDVKSCMDLALKGEQLCKNGDCRSGVQY
FEAAIQVGTEDLKTLSAVYSQLGNAYFYLQEYEKALEFHKHDLTLARTLG
DKLGEAKASGNLGNTLKVLGKFDEAIFCCTRHLDTSRDLKDKIGEARALY
NLGNVYHAKGKHLGRSRHRDPGDFPFEVQQALSRAVEFYEANLILVHELN
DRAAEGRAYGNLGNTHYLLGNFEKAVQYHEERLLIAREFNDKAAERRAFS
NLGNAHVFLGEFEIAVEYYKKTRDLAKELNDKAIEAQACYSLGNTYTLLK
KYSSAVEYHKEHLSFAQELEDRVGEGRAYWSLGNALTAIGQHKEALSFAM
QHLLISKEVGDRTGELTAEMNISDLRAVLGVDRSAEASNAMSSGEVQKLF
GSRKLIYYTSFIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007075XLOC_007075Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012606TCONS_00012606Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 206..239
e-value: 5.4E-5
score: 32.6
coord: 246..279
e-value: 0.057
score: 22.6
coord: 146..173
e-value: 320.0
score: 1.7
coord: 28..61
e-value: 140.0
score: 4.8
coord: 286..319
e-value: 0.0014
score: 27.9
coord: 326..359
e-value: 22.0
score: 12.0
coord: 66..99
e-value: 0.003
score: 26.8
coord: 106..139
e-value: 0.0053
score: 26.0
IPR019734Tetratricopeptide repeatPFAMPF13176TPR_7coord: 208..242
e-value: 1.2E-5
score: 24.9
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 286..319
score: 7.405
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 246..279
score: 8.762
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 206..239
score: 7.818
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 326..359
score: 5.841
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 106..139
score: 5.133
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 66..99
score: 8.821
NoneNo IPR availableGENE3D1.10.150.200coord: 206..254
e-value: 5.6E-12
score: 44.9
coord: 58..114
e-value: 3.3E-14
score: 52.0
NoneNo IPR availablePFAMPF13424TPR_12coord: 247..317
e-value: 4.8E-10
score: 39.5
coord: 66..126
e-value: 5.1E-9
score: 36.2
NoneNo IPR availableGENE3D3.30.70.100coord: 330..373
e-value: 2.7E-6
score: 27.1
coord: 146..205
e-value: 7.1E-13
score: 48.2
coord: 115..145
e-value: 3.0E-12
score: 46.2
coord: 297..329
e-value: 8.9E-12
score: 44.7
NoneNo IPR availableGENE3D1.20.960.10coord: 23..57
e-value: 0.32
score: 10.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 255..296
e-value: 5.1E-9
score: 35.5
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 29..162
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 183..361
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 66..139
score: 9.901
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 206..359
score: 17.615

Blast
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BLAST of TCONS_00012606-protein vs. Swiss-Prot (Human)
Match: GPSM2 (G-protein-signaling modulator 2 OS=Homo sapiens GN=GPSM2 PE=1 SV=3)

HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 260/370 (70.27%), Postives = 310/370 (83.78%), Query Frame = 0 
Query:   27 SCMDLALKGEQLCKNGDCRSGVQYFEAAIQVGTEDLKTLSAVYSQLGNAYFYLQEYEKALEFHKHDLTLARTLGDKLGEAKASGNLGNTLKVLGKFDEAIFCCTRHLDTSRDLKDKIGEARALYNLGNVYHAKGKHLGRSRHRDPGDFPFEVQQALSRAVEFYEANLILVHELNDRAAEGRAYGNLGNTHYLLGNFEKAVQYHEERLLIAREFNDKAAERRAFSNLGNAHVFLGEFEIAVEYYKKTRDLAKELNDKAIEAQACYSLGNTYTLLKKYSSAVEYHKEHLSFAQELEDRVGEGRAYWSLGNALTAIGQHKEALSFAMQHLLISKEVGDRTGELTAEMNISDLRAVLGVDRSAEASNAMSSGEV 396
            SC++LAL+GE+LCK+GDCR+GV +FEAA+QVGTEDLKTLSA+YSQLGNAYFYL +Y KALE+H HDLTLART+GD+LGEAKASGNLGNTLKVLG FDEAI CC RHLD SR+L DK+GEARALYNLGNVYHAKGK  G    +D G+FP EV+ AL  AV+FYE NL LV  L DRAA+GRA+GNLGNTHYLLGNF  AV  HE+RLLIA+EF DKAAERRA+SNLGNA++FLGEFE A EYYKKT  LA++L D+A+EAQ+CYSLGNTYTLL+ Y  A++YH +HL+ AQEL DR+GEGRA WSLGNA TA+G H +A+ FA +HL IS+EVGD++GELTA +N+SDL+ VLG+  S   S    + E+
Sbjct:   23 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI 392
The following BLAST results are available for this feature:
BLAST of TCONS_00012606-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPSM20.000e+070.27G-protein-signaling modulator 2 OS=Homo sapiens GN... [more]
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