TCONS_00012552-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012552-protein
Unique NameTCONS_00012552-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012552-protein ID=TCONS_00012552-protein|Name=TCONS_00012552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MLLQSFFPRMHARSPIKRLMSTFLNQNVSQQQIQQLNDQIPHVNSSDEVI
GPVSKKDSHVRPQGAEGTGLLHRAFSVFLFNSERQLLLQQRSSSKITFPD
YLTNTCCSHPRFNDDELNEKYNVGIKIAAQRRLKFELGITKDQVPLESFT
HLTRIHYSGNSDENWCEHEIDHVLICQKDVHLEPNLDEVQKCYYVTQDEL
ETLLRTADDAGILLTPWFRYISNTFLFQWWNNLDDLSSFKDDVIHRAGHQ
P
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007043XLOC_007043Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012552TCONS_00012552Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011876IsopentenylPP_isomerase_typ1
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0004452isopentenyl-diphosphate delta-isomerase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004452 isopentenyl-diphosphate delta-isomerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.79.10coord: 71..245
e-value: 1.1E-24
score: 86.5
IPR011876Isopentenyl-diphosphate delta-isomerase, type 1TIGRFAMTIGR02150TIGR02150coord: 43..221
e-value: 9.4E-46
score: 153.5
IPR011876Isopentenyl-diphosphate delta-isomerase, type 1PIRSFPIRSF018427Isopentenyldiphpt_isomcoord: 20..244
e-value: 1.4E-68
score: 228.5
IPR011876Isopentenyl-diphosphate delta-isomerase, type 1CDDcd02885IPP_Isomerasecoord: 38..221
e-value: 7.38855E-65
score: 200.868
IPR000086NUDIX hydrolase domainPFAMPF00293NUDIXcoord: 71..213
e-value: 6.8E-16
score: 58.4
IPR000086NUDIX hydrolase domainPROSITEPS51462NUDIXcoord: 70..220
score: 16.495
IPR015797NUDIX hydrolase domain-likeSUPERFAMILY55811Nudixcoord: 40..233

Blast
[Close]
BLAST of TCONS_00012552-protein vs. Swiss-Prot (Human)
Match: IDI1 (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.780e-66
Identity = 107/214 (50.00%), Postives = 148/214 (69.16%), Query Frame = 0 
Query:   28 VSQQQIQQLNDQIPHVNSSDEVIGPVSKKDSHVRPQGAEGTGLLHRAFSVFLFNSERQLLLQQRSSSKITFPDYLTNTCCSHPRFNDDELNEKYNVGIKIAAQRRLKFELGITKDQVPLESFTHLTRIHYSGNSDENWCEHEIDHVLICQKDVHLEPNLDEVQKCYYVTQDELETLLRTADDAGILLTPWFRYISNTFLFQWWNNLDDLSSFKD 241
            + +QQ+Q L +    ++ +D  IG  +KK+ H+     +G  LLHRAFSVFLFN+E +LLLQQRS +KITFP   TNTCCSHP  N  EL E   +G++ AAQRRLK ELGI  ++VP E   +LTRIHY   SD  W EHEID++L+ +K+V L P+ +E++   YV+++EL+ LL+ A    I +TPWF+ I+ TFLF+WW+NL+ L+ F D
Sbjct:    9 LDKQQVQLLAEMCILIDENDNKIGAETKKNCHLNENIEKG--LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLFKWWDNLNHLNQFVD 220
The following BLAST results are available for this feature:
BLAST of TCONS_00012552-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDI11.780e-6650.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
back to top