TCONS_00012454-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012454-protein
Unique NameTCONS_00012454-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012454-protein ID=TCONS_00012454-protein|Name=TCONS_00012454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MATRPRGYGMTAELARKREKNFDASVANDTFDWMKSVLVDGGHDSDADSL
KLISSSADVIAPLKNGVVLCNLINVIQAGSVKRINTSKMAFKQMENINNF
LTACETLGCKKLDLFQTVDLYEGTNPNQVINGIVALGRKAQSYYDGPVLG
PAEASENKREFSEEQLRAGEGIIGLQAGSNKGASQAGQNFGKTRAIID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006993XLOC_006993Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012454TCONS_00012454Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001997Calponin/LIMCH1
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Biological Process
TermDefinition
GO:0031032actomyosin structure organization
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031032 actomyosin structure organization
molecular_function GO:0003779 actin binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003096Smooth muscle protein/calponinPRINTSPR00888SM22CALPONINcoord: 108..123
score: 53.31
coord: 161..174
score: 50.0
coord: 3..17
score: 33.33
coord: 129..143
score: 31.37
coord: 174..189
score: 69.12
coord: 92..108
score: 49.48
coord: 22..35
score: 17.23
IPR001997Calponin/LIMCH1PRINTSPR00889CALPONINcoord: 122..137
score: 41.25
coord: 70..87
score: 53.89
coord: 190..198
score: 15.0
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 27..136
e-value: 7.3E-15
score: 65.4
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 15..184
e-value: 4.9E-33
score: 113.4
IPR001715Calponin homology domainPFAMPF00307CHcoord: 29..141
e-value: 4.9E-20
score: 71.6
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 24..140
score: 14.425
IPR001715Calponin homology domainCDDcd00014CHcoord: 32..141
e-value: 2.13886E-20
score: 81.5883
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 17..183
IPR000557Calponin repeatPFAMPF00402Calponincoord: 173..196
e-value: 4.2E-10
score: 39.0
IPR000557Calponin repeatPROSITEPS01052CALPONIN_1coord: 173..191
IPR000557Calponin repeatPROSITEPS51122CALPONIN_2coord: 173..197
score: 11.146

Blast
[Close]
BLAST of TCONS_00012454-protein vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.301e-42
Identity = 85/206 (41.26%), Postives = 115/206 (55.83%), Query Frame = 0 
Query:    1 MATRPRGYGMTAELARKREKNFDASVANDTFDWMKSVLVDGGHDSDADSLKLISSSADVIAPLKNGVVLCNLINVIQAG---SVKRINTSKMAFKQMENINNFLTACETLGCKKLDLFQTVDLYEGTNPNQVINGIVALGRKAQSYYDG-----PVLGPAEASENKREFSEEQLRAGEGIIGLQAGSNKGASQAGQN-FGKTRAII 197
            MA R   YG++ E+  K E+ +DA + N   DW   +++    D +          A     L +G VLC LIN +       + +I+ SKMAFKQME I+ FL A ET G +  D+FQTVDL+EG +   V   ++ALG  A +  DG     P     +A +N+R FSEEQLR G+ +IGLQ GSNKGASQAG   +G  R I+
Sbjct:    1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDW---IILQCAEDIEHPP----PGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
BLAST of TCONS_00012454-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL37.301e-4241.26Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2[more]
back to top