TCONS_00012439-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012439-protein
Unique NameTCONS_00012439-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012439-protein ID=TCONS_00012439-protein|Name=TCONS_00012439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MLLAAIKQPIKRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEY
SQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKP
YPCNICPKRFKFSSALQRHMRSHTPSFEGPRCDKRFEQANHLGEHNCGGK
KELVQPVDCISNFESNPVDTGTCFSIETLQKSSCNPHDETPRERRIISTD
KPTITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRV
HTGEKPFACQICGKTFSQAPHVRKHLLTHITFDQDYESTMMMDLANS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006986XLOC_006986Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012439TCONS_00012439Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 101..123
e-value: 1.3E-4
score: 31.3
coord: 41..63
e-value: 0.014
score: 24.6
coord: 229..251
e-value: 0.0023
score: 27.2
coord: 13..35
e-value: 0.0015
score: 27.8
coord: 72..94
e-value: 0.061
score: 22.5
coord: 257..279
e-value: 0.0011
score: 28.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 43..63
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 259..279
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 103..123
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 15..35
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 74..94
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 231..251
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 72..99
score: 10.97
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 229..256
score: 15.812
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 13..40
score: 16.934
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 41..68
score: 11.946
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 257..279
score: 11.177
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 101..128
score: 12.175
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 11..63
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 227..279
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 50..110
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 98..145
NoneNo IPR availableGENE3D2.20.25.10coord: 5..20
e-value: 0.0052
score: 16.3
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 41..63
e-value: 6.2E-4
score: 20.0
coord: 257..279
e-value: 1.7E-4
score: 21.8
coord: 72..94
e-value: 3.7E-4
score: 20.7
coord: 13..35
e-value: 2.0E-5
score: 24.7
coord: 229..251
e-value: 0.0035
score: 17.6
coord: 101..123
e-value: 8.5E-7
score: 29.0
NoneNo IPR availableGENE3D3.30.160.60coord: 85..111
e-value: 5.0E-14
score: 51.9
coord: 242..264
e-value: 7.0E-18
score: 64.2
NoneNo IPR availableGENE3D3.30.160.60coord: 265..281
e-value: 0.001
score: 18.7
coord: 21..32
e-value: 9.7E-10
score: 38.0
NoneNo IPR availableGENE3D2.20.28.30coord: 112..137
e-value: 5.4E-12
score: 45.4
NoneNo IPR availableGENE3D3.30.160.60coord: 33..56
e-value: 6.4E-15
score: 54.4
coord: 138..241
e-value: 6.4E-9
score: 35.2
NoneNo IPR availableGENE3D3.30.160.60coord: 57..84
e-value: 2.9E-9
score: 36.7

Blast
BLAST of TCONS_00012439-protein vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.045e-38
Identity = 105/272 (38.60%), Postives = 127/272 (46.69%), Query Frame = 0
Query:   11 KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDCISNFESNPVDT-GTCFSIETLQKSSCNPHDETPRERRIISTDKPTITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 279
            K YKC  C K F   S    H R HTGEKPF C +C K +SQ+S+ Q H++ H G   EK +KC++C K F +   LH H   H   +KPY C  C K F  +S LQ H   HT    F+   C KRF QA+HL  H      E  +P  C         DT G  FS    Q+S+   H       +II T +                         K  KC  C KEF + +GL  H RVHTGEKP+ CQ CGK FSQA H   H   H
Sbjct:  485 KPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTG---EKPYKCEVCGKRFNWSLNLHNHQRVHTG-EKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGE--KPYKC---------DTCGKAFS----QRSNLQVH-------QIIHTGE-------------------------KPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVH 705          

HSP 2 Score: 133.265 bits (334), Expect = 6.419e-35
Identity = 105/289 (36.33%), Postives = 135/289 (46.71%), Query Frame = 0
Query:   11 KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDC---------ISNFESNP-VDTG----TCFSIETLQKSSCNPHDETPRERRIISTDKP----TITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 279
            K Y+C SC K F   + L  H R HTGEKP+ C +C K ++Q SHLQ HE+ H G   EK +KC  C K F   S LH H   H + +KPY C+ C K F  S  L  H R HT    ++   C K F  A+    H      E  +P  C          S F+++  V TG     C         S N H+     +R+ + +KP       + FS   N +        E P   KC  CQK F   S LQ H RVHTGEKP+ C  CGK FSQ  +++ H + H
Sbjct:  373 KPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTG---EKPYKCGDCGKRFSCSSNLHTHQRVHTE-EKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGE--KPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHN----HQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKP--FKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIH 649          

HSP 3 Score: 128.257 bits (321), Expect = 3.852e-33
Identity = 97/281 (34.52%), Postives = 136/281 (48.40%), Query Frame = 0
Query:    5 AIKQPIKRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDCISNFESNPVDTGTCFSIETLQKSSCNPHDETPRERRIISTDKP----TITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 279
            +++   KRY C  C K F   S L  H R HTGEKP++C  C K ++Q+SHL  H   H G   EK ++C  C K F   ++L+ H   H   +KPY C +C K F   S LQ H R HT    ++   C KRF  +++L  H     +E  +P  C         + G CFS+      S N H      +R+ + +KP       + FSS  + +        E P   +C VC K F   S  Q H RVHTGEKP+ C++CGK F+ + ++  H   H
Sbjct:  311 SVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTG---EKPYRCDSCGKGFSRSTDLNIHCRVHTG-EKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEE--KPYKCD--------ECGKCFSL------SFNLHS----HQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKP--FRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVH 565          

HSP 4 Score: 111.309 bits (277), Expect = 2.237e-27
Identity = 91/271 (33.58%), Postives = 127/271 (46.86%), Query Frame = 0
Query:   15 CSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDCISNFESNPVDTGTCFSIETLQKSSCNPHDETPRERRIISTDKP----TITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 279
            CS+ +K   Y SG+       TG+K + C  C K +SQ+S+LQ H++ H G   EK + C  C K+F   S L+ H+  H   +KPY C+ C K F  S+ L  H R HT    ++   C K F Q +HL  H      E +   +        P   G C      ++ SC+ +  T   +R+ + +KP       + FS   N          E P  +KC  C K F   S  Q H RVHTGEKPF C +CGK FSQ+ + + H   H
Sbjct:  293 CSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTG---EKPYTCHECGKSFNQSSHLYAHLPIHTG-EKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAH------ERIHTGE-------KPYKCGDCG-----KRFSCSSNLHT--HQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKP--YKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVH 537          

HSP 5 Score: 84.3445 bits (207), Expect = 3.456e-18
Identity = 50/114 (43.86%), Postives = 61/114 (53.51%), Query Frame = 0
Query:   11 KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHT 124
            K YKC +C KAF   S L  H   HTGEKPF C  C KE+S ++ L  H++ H G   EK + CQ C K F   S  H H   H   ++PY C++C K F   S L  H R HT
Sbjct:  625 KPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTG---EKPYTCQQCGKGFSQASHFHTHQRVHTG-ERPYICDVCCKGFSQRSHLIYHQRVHT 734          
The following BLAST results are available for this feature:
BLAST of TCONS_00012439-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2351.045e-3838.60Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 ... [more]
back to top