TCONS_00012438-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012438-protein
Unique NameTCONS_00012438-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012438-protein ID=TCONS_00012438-protein|Name=TCONS_00012438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MEAAEGFIGYYVSLQCDNDSTYEGEVKSIDPERQLITLTHAHQMTADGRD
MKFPQITLTGNHVNNLKIIRQKLKIPDLNQHIQDQQKSEKNKKRTSPPNR
DPDNTYNSYNNTKPAQQQRKKSGTFTSQDASEISMFPDFDFQQNNARFDK
QAVYEKMLQETDSIPNPAPLYDPKMRSQDNILESEPVSLRQIQVPLEHAG
KEFATEDGFIIPAITLSLKMKLYAAAEKAGLSIHQLVETSGICVSQMAIQ
LVGGALRLNPKNSHQRPEIVVLAGCHTQGLQAICTARHLANHRCKVVLYF
PNSSPELQPQINLFQSAGGKIIKSTRELPSQPVDMIIDAMVGHENHQPTP
WLPYAVSWANQNKAPVMSIDPCIPNSKVDLPNIKWAISLGLPLIKSPTPG
RLYLADLGIPRGVFRDAGIQYVSPFKDKFCIPLYES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006985XLOC_006985Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012438TCONS_00012438Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR019050FDF_dom
IPR004443YjeF_N_dom
IPR025762DFDF
IPR010920LSM_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 1..86
e-value: 2.6E-15
score: 66.9
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 7..70
e-value: 3.8E-8
score: 33.2
IPR019050FDF domainSMARTSM01199FDF_2coord: 133..203
e-value: 2.8E-6
score: 36.9
IPR004443YjeF N-terminal domainGENE3D3.40.50.10260coord: 181..436
e-value: 1.6E-46
score: 158.1
IPR004443YjeF N-terminal domainPFAMPF03853YjeF_Ncoord: 234..370
e-value: 1.2E-19
score: 70.8
IPR004443YjeF N-terminal domainPROSITEPS51385YJEF_Ncoord: 217..415
score: 28.77
IPR004443YjeF N-terminal domainSUPERFAMILY64153YjeF N-terminal domain-likecoord: 220..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..128
IPR025762DFDF domainPROSITEPS51512DFDFcoord: 127..163
score: 10.545
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..70

Blast
[Close]
BLAST of TCONS_00012438-protein vs. Swiss-Prot (Human)
Match: EDC3 (Enhancer of mRNA-decapping protein 3 OS=Homo sapiens GN=EDC3 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.858e-79
Identity = 149/374 (39.84%), Postives = 223/374 (59.63%), Query Frame = 0 
Query:   78 LNQHIQDQQKSEKNKKR---TSPPNRDPDNTYNSYNNTKPAQQQRKKSGTFTSQDASEISMFPDFDFQQNNARFDKQAVYEKM-------LQETDSIPNPAPLYDPKMRSQDNILESEPVSLRQIQVPLEHAGKEFATEDGFIIPAITLSLKMKLYAAAEKAGLSIHQLVETSGICVSQMAIQLVGGALRLNPKNSHQRPEIVVLAGCHTQGLQAICTARHLANHRCKVVLYFPNSSPELQP---QINLFQSAGGKIIKSTRELPSQPVDMIIDAMVGHEN--HQPTPWLPYAVSWANQNKAPVMSIDPCIPNSKVDLPNIKWAISLGLPLIKSPTPGRLYLADLGIPRGVFRDAGIQYVSPFKDKFCIPLYES 436
            +++H++   +S+  ++R    S  +R P+      +  K  Q + K    F   D  EI    DFDF+ N A FDK AV+E++          +  IPN  P    + R  +NILESEP+  R+I VP  +  KEF T+ G ++P+I+  L  KL + AEK GL++ + +E +G+C SQMA+ L+GG  RLNPKN HQRP + +L G H +G Q I   RHLANH  +V+L+ PN    L+    +++LF    G+ + S ++LP+ PVD++I+ +   EN   +  PW   AV+WANQN+APV+SIDP +   +  + + KW+++LGLPL      GR+YL D+GIP+ VF++ GI Y SPF  KF IPL+ +
Sbjct:  142 VDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDECF-GDDIEEIPD-TDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNERPT---RYRHDENILESEPIVYRRIIVP-HNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGI-DAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHSA 508
The following BLAST results are available for this feature:
BLAST of TCONS_00012438-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EDC32.858e-7939.84Enhancer of mRNA-decapping protein 3 OS=Homo sapie... [more]
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