TCONS_00012304-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012304-protein
Unique NameTCONS_00012304-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012304-protein ID=TCONS_00012304-protein|Name=TCONS_00012304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MNRITEESLKKKKNEFDVETIYVMDLSNQGIFDISALGRCLNLMILDLSG
NNIPSVMALRLLTQLRILDLARNRLSALSGIESLESLEMLDISGNFLTSL
DSMLSLTKLEKLNTLVIEDKLKNASNPVVDTFSNRFEMVDQLKEMVPSLL
AVDGLVSTNDATIFNDTCKNASKDFNKEVSKYLENLKMPRYHLQDQTFVR
IGFEENAIYNTAKELSSDCQELNKQAQKILNQMTRNHCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006922XLOC_006922Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012304TCONS_00012304Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025875Leu-rich_rpt_4
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 212..232
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 84..97
score: 48.89
coord: 65..78
score: 47.23
IPR025875Leucine rich repeat 4PFAMPF12799LRR_4coord: 63..101
e-value: 1.7E-7
score: 31.3
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 1..195
e-value: 1.6E-20
score: 72.3
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 21..160
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 64..85
score: 8.043
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 42..63
score: 8.274
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..107
score: 7.827
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 20..41
score: 4.824

Blast
[Close]
BLAST of TCONS_00012304-protein vs. Swiss-Prot (Human)
Match: LRC61 (Leucine-rich repeat-containing protein 61 OS=Homo sapiens GN=LRRC61 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.166e-22
Identity = 64/229 (27.95%), Postives = 108/229 (47.16%), Query Frame = 0 
Query:    3 RITEESLKKKKNEFDVETIYVMDLSNQGIFDISALGRCLNLMILDLSGNNIPSVMALRLLTQLRILDLARNRLSALSGIESLESLEMLDISGNFLTSLDSMLSLTKLEKLNTLVIEDKLKNASNPVVDTFSNRFEMVDQLKEMVPSLLAVDGLVSTNDATIFNDTCKNASKDFNKEVSKYLENLKMPRYHLQDQTFVRIGFEENAIYNTAKELSSDCQELNKQAQKILN 231
            +IT + LK +  EF +E+I ++ L   G+ D+  LG CL L  LDLSGN +  +  L  L QL +L+++ NRL+ L  + + E+L+ L+ +GN L +   +  L  L  L  L + D L   SNP+    S        ++E++P L  +DG       + F   C++         S        PR   + Q +V  G+ E+    ++  L   C++     Q+  +
Sbjct:   15 QITPQLLKSRTGEFSLESILLLKLRGLGLADLGCLGECLGLEWLDLSGNALTHLGPLASLRQLAVLNVSNNRLTGLEPLATCENLQSLNAAGNLLATPGQLQCLAGLPCLEYLRLRDPLARLSNPLCANPS----YWAAVRELLPGLKVIDGERVIGRGSEFYQLCRDLDSSLRPSSS------PGPR-ATEAQPWVEPGYWESWPSRSSSILEEACRQFQDTLQECWD 232
The following BLAST results are available for this feature:
BLAST of TCONS_00012304-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC616.166e-2227.95Leucine-rich repeat-containing protein 61 OS=Homo ... [more]
back to top