TCONS_00012273-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012273-protein
Unique NameTCONS_00012273-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012273-protein ID=TCONS_00012273-protein|Name=TCONS_00012273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
NLVILEDKMANIIPDANDDISKPVLPFSKTDEIDYRNLLGLAEFFRSCQP
SRIRETIHCLQATLSIETLPLLEKAKCRLNLAKLLLQHTKNVGHARAQLE
QAHQITSFEKDDGISSKIYFDSTSILASLCIEQGQGTLAKNILRKALERS
VQSKLKHWHYRLLFQLADAHSRDREYDVSIELLSALGESTAKENRHEYIR
ILYMLSKCLLYLASKDLPKFEQTLNSVEPMKQEYVGKAPSIHKRETIKIF
SGFLKVYYYIVTGRPKTGKEDLKELQRSIQTLAATPDEVPIPDDPEGFQW
LSKDHLCVLVYLVTVMHSMHSGLMDRALRHTEKALSLIEKLKAVGNENRV
TSFFNLSLLEHAVMCRIIQGQGSHAIQEIGKACQLCSEDQQLMTSMKPAL
HTLLGLYGMSMNLMGDAEEHFKKALRFSNNQCDVYCVAAMNLAVIYIRNG
PQKAVAFQQLLESLNSDTISRSKNLRSSYFYMMGLKTFFESNYDDAKKFL
RESLRIGNTEDLNRMTACSLILLGHVITSQANAQEAVTMVVPAMQVANKI
PDVYLQLWASSLLKDIYRLLNDQQGEQEGAQLHNMYTTQLLQDHFMAGQR
TEHALLKDFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006911XLOC_006911Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012273TCONS_00012273Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR019440MAU2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007064mitotic sister chromatid cohesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007064 mitotic sister chromatid cohesion
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 299..604
e-value: 3.4E-13
score: 49.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 7..291
e-value: 9.0E-12
score: 44.1
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 367..554
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 86..233
IPR019440Chromatid cohesion factor MAU2PFAMPF10345Cohesin_loadcoord: 35..582
e-value: 5.7E-69
score: 233.0

Blast
[Close]
BLAST of TCONS_00012273-protein vs. Swiss-Prot (Human)
Match: SCC4 (MAU2 chromatid cohesion factor homolog OS=Homo sapiens GN=MAU2 PE=1 SV=2)

HSP 1 Score: 420.239 bits (1079), Expect = 6.061e-140
Identity = 236/580 (40.69%), Postives = 358/580 (61.72%), Query Frame = 0 
Query:   35 YRNLLGLAEFFRSCQPSRIRETIHCLQATLSIETLPLLEKAKCRLNLAKLLLQHTKNVGHARAQLEQA----HQITSFEKDDGISSKIYFDSTSILASLCIEQGQGTLAKNILRKALERSVQSKLKHWHYRLLFQLADAHSRDREYDVSIELLSALGESTAKENRHEYIRILYMLSKCLLYLASKDLPKFEQTLNSVEPMKQEYVGKAPSIHKRETIKIFSGFLKVYYYIVTGRPKTGKEDLKELQRSIQTLAATPDEVPIPDDPEG-FQWLSKDHLCVLVYLVTVMHSMHSGLMDRALRHTEKALSLIEKLKAVGNENRVTSFFNLSLLEHAVMCRIIQGQGSHAIQEIGKACQLCSEDQQLMTSMKPALHTLLGLYGMSMNLMGDAEEHFKKALRFSNNQCDVYCVAAMNLAVIYIRNGPQKAVAFQQLLESLNSD---TISRSKNLRSSYFYMMGLKTFFESNYDDAKKFLRESLRIGNTEDLNRMTACSLILLGHVITSQANAQEAVTMVVPAMQVANKIPDVYLQLWASSLLKDIYRLLNDQQGEQEGAQLHNMYTTQLLQDHFMAGQRTEHALL 606
            Y  LLG AE FR+  P +IR  +HCLQA    +  P   +A+  L L  +L  HTKN   AR+ LE+A     QI  FE        + F++ S+L+ L  ++     AK +LRKA++ S Q+   +WH RLLFQLA  H+ +++   + +LL  +G   A+    EY R L++LSK +L L  + L +    L     + + + G      ++E++++F   L+V +Y+  G+ K+ K  LK+LQ+ IQT++   D+  +P +P   F WL K+H+CVLVYLVTVMHSM +G +++A ++T+KAL  +EKLK + + + + S F + LLEH +MCR++ G  + A+QEI + CQLC +  +L ++    LHTLLGLY +S+N M +AE  F  ALR +N+Q +++     NLA +YIR G +       LLE +N D    +S S  LR++ FY+ GL +FF+  Y++AK+FLRE+L++ N EDLNR+TACSL+LLGH+     N +E+  MVVPAMQ+A+KIPD+ +QLW+S+LL+D+ +   +     E AQ+H  ++ QLLQDH  A    EH L+
Sbjct:   26 YLALLGFAEHFRTSSPPKIRLCVHCLQAVFPFKP-PQRIEARTHLQLGSVLYHHTKNSEQARSHLEKAWLISQQIPQFED-------VKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTP--YWHCRLLFQLAQLHTLEKDLVSACDLL-GVGAEYARVVGSEYTRALFLLSKGMLLLMERKLQEVHPLLTLCGQIVENWQGNPI---QKESLRVFFLVLQVTHYLDAGQVKSVKPCLKQLQQCIQTISTLHDDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLEKLKML-DCSPILSSFQVILLEHIIMCRLVTGHKATALQEISQVCQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQ-ELWAFIVTNLASVYIREGNRHQEVLYSLLERINPDHSFPVS-SHCLRAAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEHNLI 588
The following BLAST results are available for this feature:
BLAST of TCONS_00012273-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCC46.061e-14040.69MAU2 chromatid cohesion factor homolog OS=Homo sap... [more]
back to top