TCONS_00012226-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012226-protein
Unique NameTCONS_00012226-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012226-protein ID=TCONS_00012226-protein|Name=TCONS_00012226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MLGEDDHNDLDNEPINAEDLFGDDLGLDGNENEPAADTGDPDGAPAAGSE
DPSTGAAKPATKKRVINRLPNLNDQWLIDSKRENIRQVNGYFEKIKFKKG
KGQERENLKMILQRYEYFGQNCYPKLCFKDFVEKVEFVSGKSRIKHVLQD
IRLDRNMNPGGSDDDDDNGEEQAMNIEDPVPNTMPMNDDHQSTTSPARES
SPPNSPPPPPPKPMTDEMREMIRKKREEALAKRKQKMDESMNKSITNEND
EESTDNEQLIEQSQTNENSKSENRKNEVDANSTLKENEENLVNEEKNLES
NGSSETKEQENKKNENENETDFEIDLEKASTQESVITKNNEQEEMNKIAE
ESKMDID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006879XLOC_006879Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012226TCONS_00012226Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012923Csm3
Vocabulary: Biological Process
TermDefinition
GO:0006974cellular response to DNA damage stimulus
GO:0007049cell cycle
GO:0048478replication fork protection
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0048478 replication fork protection
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 242..262
NoneNo IPR availableCOILSCoilCoilcoord: 281..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..357
IPR012923Chromosome segregation in meiosis protein 3PFAMPF07962Swi3coord: 85..154
e-value: 3.9E-14
score: 52.3
IPR012923Chromosome segregation in meiosis protein 3PRODOMPD089639coord: 50..145
e-value: 9.0E-9
score: 146.0

Blast
[Close]
BLAST of TCONS_00012226-protein vs. Swiss-Prot (Human)
Match: TIPIN (TIMELESS-interacting protein OS=Homo sapiens GN=TIPIN PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.587e-18
Identity = 82/284 (28.87%), Postives = 138/284 (48.59%), Query Frame = 0 
Query:   42 DGAPAAGSEDPSTGAAKPATKKRVINR-LPNLNDQWLIDSKRENIRQVNGYFEKIKFKKGKGQERENLKMILQRYEYFGQNCYPKLCFKDFVEKVEFVSGKSRIKHVLQDIRLDRNMNPGGSDDDDDNGEEQAMNIEDPVPNTM--PMNDDHQSTTSPARESSPPNSPPPPPPKPMTDEMREMIRKKREEALAKRKQKMDESMNKSITNENDE-ESTDNEQLIEQSQTNENSKSE-NRKNEVDANSTLKENEENLVNEEKNLESNGSSETKEQENKKNENENET 320
            DG      E+   GA      KR + R +P L+ Q LI  +   +  +   F+K KFK GKG E E+LKM+++  E++    +PKL F+DF+++VE++  K  ++  L+ IRLD    P   +D   N +E A N E  V +T   P   +   +   A E S          + +T+E ++ I + ++ AL +R+ K+   ++ S T  ND   +T     +E+  T+E+ K E N  NE   ++   +   N +NEE+ L        ++Q +  + N  E 
Sbjct:   36 DGEGTEPDEESGNGAPVRVPPKRTVKRNIPKLDAQRLISER--GLPALRHVFDKAKFK-GKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL---PILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELS----------RSLTEEQQQRIERNKQLALERRQAKL---LSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEESNGLNEDILDNPCNDAIANTLNEEETLLDQSFKNVQQQLDATSRNITEA 300
The following BLAST results are available for this feature:
BLAST of TCONS_00012226-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIPIN6.587e-1828.87TIMELESS-interacting protein OS=Homo sapiens GN=TI... [more]
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