TCONS_00012193-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012193-protein
Unique NameTCONS_00012193-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012193-protein ID=TCONS_00012193-protein|Name=TCONS_00012193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MGRKKIQISRINDERNRQVTFTKRKFGLMKKAYELSILCDCEIALIIFNS
SNKLFQYASTDMDKILLKYTEYNEPHESRTNADIHETISRKENKNCGSPD
DDSFVLTPRTEMKYQKINEEFEIMMKKSSNGVTSSYPQMGSLPHNMPSPH
DDTGKDMRSTTPLQRDGRLSASPHPHAPLHHGLTSPPPQNLSLPSRSPHP
MNPPPLGNTNNNISRSGTPNMKQGGMQNSRAQQNHTPNQQLMHGNMGNSE
SMPNNMPSQTFGGGGGGGSMQPPSLPSNFPTSYSSYDVDTGQMSYGVTSM
NNSIHSSQAISHNPTLQRSHSLNNNKPNMNIKVEPPDHMRGPSPSIHNFQ
SPNPFHHTAPPSHHKDFSDQNNMMSLGGGGPMSKRQRIEGHNDGWQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006861XLOC_006861Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012193TCONS_00012193Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR022102HJURP_C
IPR033896MADS_MEF2-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 54.64
coord: 23..38
score: 72.82
coord: 3..23
score: 58.4
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 5.2E-37
score: 139.0
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 2.8E-24
score: 84.2
IPR002100Transcription factor, MADS-boxGENE3D3.40.1810.10coord: 13..78
e-value: 6.9E-27
score: 92.6
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 29.268
IPR002100Transcription factor, MADS-boxSUPERFAMILY55455SRF-likecoord: 2..89
IPR022102Holliday junction regulator protein family C-terminalPFAMPF12347HJURP_Ccoord: 98..128
e-value: 1.9E-8
score: 34.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 312..396
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..78
e-value: 8.37243E-40
score: 136.913

Blast
[Close]
BLAST of TCONS_00012193-protein vs. Swiss-Prot (Human)
Match: MEF2A (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.910e-69
Identity = 104/127 (81.89%), Postives = 117/127 (92.13%), Query Frame = 0 
Query:    1 MGRKKIQISRINDERNRQVTFTKRKFGLMKKAYELSILCDCEIALIIFNSSNKLFQYASTDMDKILLKYTEYNEPHESRTNADIHETISRKENKNCGSPD-DDSFVLTPRTEMKYQKINEEFEIMMK 126
            MGRKKIQI+RI DERNRQVTFTKRKFGLMKKAYELS+LCDCEIALIIFNSSNKLFQYASTDMDK+LLKYTEYNEPHESRTN+DI E +++KE++ C SPD D S+VLTP TE KY+KINEEF+ MM+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMR 127
The following BLAST results are available for this feature:
BLAST of TCONS_00012193-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEF2A2.910e-6981.89Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
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