TCONS_00012065-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012065-protein
Unique NameTCONS_00012065-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012065-protein ID=TCONS_00012065-protein|Name=TCONS_00012065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=816bp
MSDYRKRYRDYDSDGSRDRKRPRSNASHNVDVEDRLESLITRVGEKSSSS
LESNLEGLASVLEADMSSYKQRVLQILCTCVTNLPEKATIYSTLVGLLNE
KSFDFGADFLDMLMSNLKEVISNGRFERGRLMIRFLCDLINCNFLVAASL
ISFLEGFVNVALEQNIPQVRSDWFIFTILSSLPWCGRELASKKPKELDHL
LDEIEMYLRRRDKLHVKALRVWSSDKPHPQEEYLDCLWEQIKTMREDSWQ
EKHIRRPYQAFHSVMLKALPHPIPSFKIPAHNDIIKYPLPSVVFRIFDYT
DAPEDKPIPGAHAIERYLVEETIWRIINTHYKDRKECAQQLLNCSAKSRV
SIEYVILEIIFGAMFRLPEPEHIFVFYGSLIIELCKLNQSLMPGCVAQTV
EILFERLNTMNITCIDRFIDWFSYHLSNFSYKWSWDDWIPYVDHSPDDNK
VRFISEVLGKCQRSTYQDKLVSTLPSEMQSLLPEATQGFFRFEAAENEES
GHAVVRKLIDGIKTKKDTHDLLGVLYEIPASDKSFYATDEAIGPAIDNNI
AALRIECFVLTILRAGLKSISHTYSALTKFHSLFTEVITTRSEQMHCLRA
VREFWGRNPLMMLIVIDKMVKLQYIQCSTVVNWIFAKEMESDFMKFSTWE
LLHNTLKKMMKHKAKVKEDLEDAHEKLDVLIDKAKKEEQRHEESDEEEND
ESKYDMTQAEIERRQEEIEELTEKVETAKKDQKELFLIVFQRFTMIISEH
IAECEKEGAKVANLWYRYTLQRLQEIFLLYHNEIDQYADKIEKLIFTPDI
APHILEVFKRYKSLRS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006778XLOC_006778Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012065TCONS_00012065Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003890MIF4G-like_typ-3
IPR015174MIF4G-like_typ-2
IPR015172MIF4G-like_typ-1
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016070 RNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 656..701
NoneNo IPR availableCOILSCoilCoilcoord: 704..731
NoneNo IPR availableGENE3D1.25.40.180coord: 32..293
e-value: 8.7E-52
score: 175.6
NoneNo IPR availableGENE3D1.25.40.180coord: 295..485
e-value: 8.3E-68
score: 227.0
NoneNo IPR availableGENE3D1.25.40.180coord: 493..814
e-value: 8.2E-67
score: 224.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 686..706
IPR003890MIF4G-like, type 3SMARTSM00543if4_15coord: 33..245
e-value: 1.8E-29
score: 113.9
IPR003890MIF4G-like, type 3PFAMPF02854MIF4Gcoord: 36..233
e-value: 2.7E-23
score: 82.7
IPR015174MIF4G-like, type 2PFAMPF09090MIF4G_like_2coord: 492..783
e-value: 5.4E-61
score: 206.3
IPR015172MIF4G-like, type 1PFAMPF09088MIF4G_likecoord: 333..475
e-value: 2.8E-32
score: 111.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 33..295
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 711..815
coord: 491..681
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 297..484

Blast
[Close]
BLAST of TCONS_00012065-protein vs. Swiss-Prot (Human)
Match: NCBP1 (Nuclear cap-binding protein subunit 1 OS=Homo sapiens GN=NCBP1 PE=1 SV=1)

HSP 1 Score: 747.273 bits (1928), Expect = 0.000e+0
Identity = 347/813 (42.68%), Postives = 533/813 (65.56%), Query Frame = 0 
Query:    5 RKRYRDYDSDGSRDRKRPRSNASHNVDVEDRLESLITRVGEKSSSSLESNLEGLASVLEADMSSYKQRVLQILCTCVTNLPEKATIYSTLVGLLNEKSFDFGADFLDMLMSNLKEVISNGRFERGRLMIRFLCDLINCNFLVAASLISFLEGFVNVALEQNIPQVRSDWFIFTILSSLPWCGRELASKKPKELDHLLDEIEMYLRRRDKLHVKALRVWSSDKPHPQEEYLDCLWEQIKTMREDSWQEKHIRRPYQAFHSVMLKALPHPIPSFKIPAHNDIIKYPLPSVVFRIFDYTDAPEDKPIPGAHAIERYLVEETIWRIINTHYKDRKECAQQLLNCSAKSRVSIEYVILEIIFGAMFRLPEPEHIFVFYGSLIIELCKLNQSLMPGCVAQTVEILFERLNTMNITCIDRFIDWFSYHLSNFSYKWSWDDWIPYVDHSPDDNKVRFISEVLGKCQRSTYQDKLVSTLPSEMQSLLPEATQGFFRF-EAAENEESGHAVVRKLIDGIKTKKDTHDLLGVLYEIPASDKSFYATDEAIGPAIDNNIAALRIECFVLTILRAGLKSISHTYSALTKFHSLFTEVITTRSEQMHCLRAVREFWGRNPLMMLIVIDKMVKLQYIQCSTVVNWIFAKEMESDFMKFSTWELLHNTLKKMMKHKAKVKEDLEDAHEKLDVLIDKAKKEEQRHEESDEEENDESKYDMTQAEIERRQEEIEELTEKVETAKKDQKELFLIVFQRFTMIISEHIAECEKEGAKVANLWYRYTLQRLQEIFLLYHNEIDQYADKIEKLIFTPDIAPHILEVFKRYKSLRS 816
            R+R+ D +  G   ++R  S+A+   + ED LESLI +VGEKS+ SLESNLEGLA VLEAD+ +YK ++L++LCT    LPEK TIY+TLVGLLN ++++FG +F++ ++  LKE +    +     ++RFL DL+NC+ + A S+++  E FV+V  E+++PQVR DW+++  LSSLPW G+EL  KK  E+D +    E YL+RR K HV  L+VW++DKPHPQEEYLDCLW QI+ +++D WQE+HI RPY AF S++ +AL H +P F  P H +   YP+P V+FR+FDYTD PE   +PG+H++ER+++EE +  II +H+K+RK CA QL++   K+++ + Y I+E+IF  +F+LP P HI V Y +L+IELCKL    +P  +AQ  E+L+ RL+TMN TC+DRFI+WFS+HLSNF ++WSW+DW   +   P+  K +F+ EVL KC R +Y  +++  +P    +L P      +++ + + N   GH+V   L    K+K    ++  +L ++P  ++     +         +   L+IE FV T+L    KS SH++SAL KFH +F  +  +   ++H LR + E W  +P M+ +++DKM++ Q + C+ V NWIF+ E+  DF +   WE+LH+T++KM KH  K++++LE+A EKL           ++H+   ++++  S       E     E+IE L EKVE+A+ +QK LFL++FQRF MI++EH+  CE +G  V   WY+  ++RLQ+IFL +H  I QY   +E L+FT ++ PHIL VF+++ +L++
Sbjct:    3 RRRHSDENDGGQPHKRRKTSDAN---ETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDE-------GFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKL----------ARQHKRRSDDDDRSSDRKDGVLE-----EQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 790
The following BLAST results are available for this feature:
BLAST of TCONS_00012065-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCBP10.000e+042.68Nuclear cap-binding protein subunit 1 OS=Homo sapi... [more]
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