TCONS_00012064-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012064-protein
Unique NameTCONS_00012064-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012064-protein ID=TCONS_00012064-protein|Name=TCONS_00012064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
MSHHHYQGQGGARNSPKHLNSPLTSKQVTPKQFSSNEIFKQHNPVANKVD
IPGSKSLSKPQVYMAGERVIFAESPSAPGIPIIYRLEEERKSNPDKLNLD
RRKLSVFPLLEGEENLRLLNLQHNTITRIQHLSMLRKLIFLDLYDNHIDE
ISGLAALKCLRVLMLGKNRIRKIINLHDLKLLDVLDLHGNKISKIENLSM
LHQLRVLNLAGNDLTEVKNLNGLMSLSELNLRRNQIKAVVGLDTLPSLQR
IFLSYNEIKSFDDISCLGKSTSLVDLALDNNPLANQSNYKQAILQSIVSL
RQLDMKRLTEEEKRIAQVLARKEEEKRKESERLSSIKEKRRLAISNAQRQ
WDKQFNIGRRRSNAKDSSDLKNSSRSDTYVHGITSTRAFWGSSPEMKEYN
SCHLAELDNNVLNLYGPRSLDALDKNWGEKNNSSIEAISFKFIQFRDIIP
KLKIVKDKFLGLQSLRFEATNIVSLNELNHLDILPQLAHLHIDENNPVTQ
LKHWKEYVIFKLRQSSTALKTLNDEQITQPDMEEGQRIFGSLQTILQNEL
PSHLQDTAYVRTWHNFYNKGPHQSDEEAKNQDSNDEESFSQNYIREIVQD
SILTSRRLSHFERLWPHMLQEIVTKYTKDIMNVDAYCKMSLDKIKATL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006777XLOC_006777Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012064TCONS_00012064Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 305..339
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 135..156
e-value: 52.0
score: 9.7
coord: 179..200
e-value: 0.11
score: 21.6
coord: 245..266
e-value: 7.2
score: 15.6
coord: 201..222
e-value: 47.0
score: 10.1
coord: 157..178
e-value: 0.026
score: 23.7
coord: 223..244
e-value: 120.0
score: 6.6
NoneNo IPR availablePFAMPF14580LRR_9coord: 185..324
e-value: 9.5E-17
score: 60.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 355..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 135..159
e-value: 55.0
score: 7.2
coord: 245..268
e-value: 16.0
score: 11.6
coord: 179..200
e-value: 200.0
score: 2.6
coord: 201..223
e-value: 28.0
score: 9.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 182..334
e-value: 1.3E-29
score: 101.8
coord: 394..549
e-value: 3.6E-4
score: 19.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 87..181
e-value: 2.9E-11
score: 42.4
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 424..502
coord: 88..283
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 225..246
score: 7.635
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 203..224
score: 8.367
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 272..293
score: 4.901
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 247..268
score: 7.612
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 159..180
score: 7.827
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 115..136
score: 8.782
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 137..158
score: 8.651
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 181..202
score: 9.067
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 461..482
score: 5.132

Blast
[Close]
BLAST of TCONS_00012064-protein vs. Swiss-Prot (Human)
Match: LRC49 (Leucine-rich repeat-containing protein 49 OS=Homo sapiens GN=LRRC49 PE=2 SV=2)

HSP 1 Score: 422.935 bits (1086), Expect = 1.364e-139
Identity = 261/616 (42.37%), Postives = 373/616 (60.55%), Query Frame = 0 
Query:   74 SPSAPGIPIIYRLEEERKSNPDKLNLDRRKLSVFPLLEGEENLRLLNLQHNTITRIQHLSMLRKLIFLDLYDNHIDEISGLAALKCLRVLMLGKNRIRKIINLHDLKLLDVLDLHGNKISKIENLSMLHQLRVLNLAGNDLTEVKNLNGLMSLSELNLRRNQIKAVVGLDTLPSLQRIFLSYNEIKSFDDISCLGKSTSLVDLALDNNPLANQSNYKQAILQSIVSLRQLDMKRLTEEEKRIAQVLARKEEEKRKESERLSSIKEKRRLAISNAQRQWDKQFNIGRRRSNAKDSSDLKNSS--RSDTYVHGITSTRAFWGSSPEMKEYNSC---------HLAELDNNVLNLYGPRSLDALDKNWGEKNNSSIEAISFKFIQFRDIIPKLKIVKDKFLGLQSLRFEATNIVSLNELNHLDILPQLAHLHID-ENNPVTQLKHWKEYVIFKLRQSSTALKTLNDEQITQPDMEEGQRIFGSLQTILQNELPSH-----LQDTAYVRTWHNFYNKGPHQSDEEAKNQDSNDEESFSQN----------------------------YIREIVQDSILTSRRLSHFERLWPHMLQEIVTKYTKDIMNVDAYCKMSLDKI 644
            S S    PI+ R  EE+    D+L+L+R+KL+V P++ GE++LRLLN QHN ITRIQ++S L+KLI LDLYDN I+EISGL+ L+CLRVL+LGKNRI+KI NL +LK LDVLDLHGN+I+KIEN++ L +LRVLNLA N L+ V NLNGL SL+ELNLR NQI  V  +D LP LQ +FLS+N I SFD +SCL  S+SL D+  D NP+A +S YK  +LQ+++ LRQLDMKR+TEEE+R+A VLA+KEEEK++ES + S +KEK+RL I+N  RQWD Q    +R +N   + D K+S   +    + G T +     + P     N+          +L E+D + L+LYG  +L++LD+NW  +    I  +SF FI+F +I+  L  +K KF     L+F+ TN+V L + N L  L ++  L ID + NPV     WK YV+F+L  S  +++ +N  ++TQ DM   +R+FG L  +  +ELP +     L D    +  +   +KG        +N DS      + N                            YI ++V+++   + +    ++LWP M  E+V     +I N ++Y K+ L +I
Sbjct:   72 SSSLSSFPILQRSSEEKILYSDRLSLERQKLTVCPIINGEDHLRLLNFQHNFITRIQNISNLQKLISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEKKRESHKQSLLKEKKRLTINNVARQWDLQ---QQRVANIATNEDRKDSDSPQDPCQIDGSTLSAFPEETGPLDSGLNNALQGLSVIDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMITTVSFTFIEFDEIVQVLPKLKIKFPNSLHLKFKETNLVMLQQFNALAQLRRIDQLTIDPQGNPVVNFTLWKYYVLFRL--SHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRLISILGDARKKQFRYLLESKGKKPGIINEENNDSKRLVGENTNRATLNYTTRDFYNEKLEEIKEKKKFCKTYIEDLVKEATEINMKNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQI 682
The following BLAST results are available for this feature:
BLAST of TCONS_00012064-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC491.364e-13942.37Leucine-rich repeat-containing protein 49 OS=Homo ... [more]
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