TCONS_00012042-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012042-protein
Unique Name	TCONS_00012042-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	539

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012042-protein ID=TCONS_00012042-protein|Name=TCONS_00012042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp
MAQTLVEDRAYHLTGDENVDGKCFYSVKLTDSCLKAIEQYIIHKNTSRSQ
PRIKFDGQNGTISIPGKSSSEKKFHFGVSALSSGQGAIECIKHPDRKSNQ
LISYGSLVSKISINATEDVYENTAKRMAQVDQERKDVRTKEIDFGNMKKR
KQQTKTKIITPDSHKHTHNSSSNSSSSSSFKKKLPAPTPNHSSPSQSVSS
TSRSSPAMPNRNNAALAAAQAAGKSFTCRERVVHILALRPHKKPELIQRL
TREAMSQKDRNNLAMVIQQVSSIQDNQHKLHAHLYNDINVDTWPFYNENE
RTIVKKNIATHRKQQQTSSPQQVSSTSKSPAEEKQTVKPSSDEKPEKAHK
RSHTDKDHSPHNNKRQKTNYEEPTSTVSSSNNKTISEDSTPSPKKNAPSP
TKSNAESTATSTGEESPPTVASTSKTPEYLKQYKPIRWKEQRRQYKTDFE
TEYPVYLRLKEKVDAVKIKFKELQEEYNGYNPGTPEHQYCEKKIIEAYEK
LERDDDNYHEQRRKYEELEQKLRYIKKLVVEYDQSMMNE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006768	XLOC_006768	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012042	TCONS_00012042	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010844	Occludin_ELL
IPR019464	ELL_N
IPR011991	WHTH_DNA-bd_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006368	transcription elongation from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0008023	transcription elongation factor complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0008023	transcription elongation factor complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 456..476
None	No IPR available	COILS	Coil	Coil	coord: 498..528
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 310..435
None	No IPR available	SUPERFAMILY	144292	occludin/ELL-like	coord: 429..536
IPR010844	Occludin homology domain	PFAM	PF07303	Occludin_ELL	coord: 433..534 e-value: 5.2E-21 score: 75.2
IPR019464	RNA polymerase II elongation factor ELL, N-terminal	PFAM	PF10390	ELL	coord: 9..307 e-value: 7.5E-65 score: 219.1
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 227..308

Blast

[Close]

BLAST of TCONS_00012042-protein vs. Swiss-Prot (Human)
Match: ELL2 (RNA polymerase II elongation factor ELL2 OS=Homo sapiens GN=ELL2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.002e-27
Identity = 92/309 (29.77%), Postives = 156/309 (50.49%), Query Frame = 0

Query:    5 LVEDRAYHLT-GDENVDGKCFYSVKLTDSCLKAIEQYIIHKNTSRSQPRIKFDGQNGTISIPGKSSSEK--KFHFGVSALSSG--QGAIECIKHPDRKSN--QLISYGSLVSKISINATEDVYENTAKRMAQVDQERKDVRTKEIDFGN--MKKRKQQTKTKIITPDSHKHTHNSSSNSSSSSSFKKKLPAPTPNHSSPSQSVSSTSRSSPAMP-NRNNAALAAAQAAGKSFTCRERVVHILALRPHKKPELIQRLTREAMSQKDRNNLAMVIQQVSSI--QDNQHKLHAHLYNDINVDTWPFYNENER 301
            L E++ Y L+ G    D      VKLT++ ++A+E Y  HKN    +P I+F G +G + IP      +   F+F +S +     QG+ +CI+     S   QL   G +  KI++ AT D Y+ T +RM Q ++E ++  TK I  G   + KR Q  K                              AP     + S +V    RS+P  P N      +++  + + +  R+RV+H+LAL+ +KKPEL+ RL ++ ++QKD+N+L  ++QQV+++  +D  + L  +++ ++  D WP Y+E +R
Sbjct:    9 LREEQRYGLSCGRLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHGLVKIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRK------------------------------AP----QAVSDTVPERKRSTPMNPANTIRKTHSSSTISQRPY--RDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTLKDYVFKELQRD-WPGYSEIDR 280

HSP 2 Score: 80.1073 bits (196), Expect = 8.393e-16
Identity = 40/113 (35.40%), Postives = 69/113 (61.06%), Query Frame = 0

Query:  422 STSKTPEYLKQYKPIRWKEQRRQYKTDFETEYPVYLRLKEKVDAVKIKFKELQEEYNGYNPGTPEHQYCEKKIIEAYEKLERDDDNYHEQRRKYEELEQKLRYIKKLVVEYDQ 534
            S  + P+YL +Y  I   EQR+ YK DF  EY  Y  L  +++ V  +F +L  +    +PG+ E+Q   +++++ Y+K+++   NYHE++ + E L  KL +IK+L+ E+DQ
Sbjct:  521 SAIELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQ 633

The following BLAST results are available for this feature:

BLAST of TCONS_00012042-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012042-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ELL2	2.002e-27	29.77	RNA polymerase II elongation factor ELL2 OS=Homo s...	[more]

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TCONS_00012042-protein (polypeptide) - C. hemisphaerica