TCONS_00011985-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011985-protein
Unique NameTCONS_00011985-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011985-protein ID=TCONS_00011985-protein|Name=TCONS_00011985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MTQNFYSICENGQVFAGLNFSDTNEAQHFRQTLEKEVERRRQSIIVRKPN
ISGRAPPRPPSHPTQIAPPPPPHRSVRYTYRNGPNDPKIVLKDPRWFALF
VHIGITQAQLDDEETFKELYAFVQTNGGIETARMKLPQNEYGKYNGLAPP
PLRGFAGSSDHPFQASTNPVALTRNRCDRRTLRGPSTRNCEDTYDTGSLN
TQTVPRKSSGDWRVKQLDSWTVEDVCDWLKDISLEEYCELFRFHAIDGVE
LLEQNEESLVDALKIEPFGHRRKIMRNLTKLLEKEKEEEKRTKEKEEETP
DEFLCPITQELMTDPVIVADGYTYERASITQWFETGNNRSPMTNLPLENR
NLVPNRSLKDAINRHLGQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006725XLOC_006725Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011985TCONS_00011985Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR001660SAM
IPR013083Znf_RING/FYVE/PHD
IPR000697WH1/EVH1_dom
IPR013761SAM/pointed
IPR011026WASP_C
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0007015actin filament organization
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007015 actin filament organization
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 271..299
NoneNo IPR availableGENE3D1.10.150.50coord: 219..297
e-value: 2.1E-21
score: 75.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..76
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 291..366
IPR003613U box domainSMARTSM00504Ubox_2coord: 302..365
e-value: 1.5E-24
score: 97.6
IPR003613U box domainPFAMPF04564U-boxcoord: 300..366
e-value: 2.5E-22
score: 78.7
IPR003613U box domainPROSITEPS51698U_BOXcoord: 298..368
score: 38.162
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 217..284
e-value: 1.6E-18
score: 77.5
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 218..278
e-value: 3.5E-17
score: 62.2
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 220..284
score: 16.462
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 298..368
e-value: 5.0E-13
score: 48.2
IPR000697WH1/EVH1 domainPROSITEPS50229WH1coord: 1..40
score: 10.925
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 212..283
IPR011026Wiscott-Aldrich syndrome protein, C-terminalSUPERFAMILY47912Wiscott-Aldrich syndrome protein, WASP, C-terminal domaincoord: 93..161

Blast
[Close]
BLAST of TCONS_00011985-protein vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 6.678e-35
Identity = 77/184 (41.85%), Postives = 108/184 (58.70%), Query Frame = 0 
Query:  186 STRNCEDTYDTGSLNTQTVPRKSSGDWRVKQL-DSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIEPFGHRRKIMRNLTKLLEKEKEEEKRTKEKEEET--PDEFLCPITQELMTDPVIVADGYTYERASITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 366
            +T + + T +    + +T+ +    + ++KQ  + W+ EDV  WL    L++   +F+ + IDG ELL   +ESL D LKIE  G R K++R         K EE RTK K   +  PDEF+CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  297 ATGSMDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLR---------KIEELRTKVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00011985-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU16.678e-3541.85WD repeat, SAM and U-box domain-containing protein... [more]
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