TCONS_00011858-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011858-protein
Unique NameTCONS_00011858-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011858-protein ID=TCONS_00011858-protein|Name=TCONS_00011858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGAGKHVPRAVFIDLEPSVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTVGKELIDQVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPAN
QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSIDDDGEGEDDE
Y
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006659XLOC_006659Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011858TCONS_00011858Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 108..132
score: 60.76
coord: 10..30
score: 65.85
coord: 380..408
score: 57.47
coord: 53..72
score: 65.83
coord: 95..106
score: 65.77
coord: 178..191
score: 68.58
coord: 134..152
score: 69.83
coord: 192..212
score: 59.18
coord: 153..174
score: 46.51
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 347..360
score: 93.16
coord: 148..160
score: 82.81
coord: 422..438
score: 84.78
coord: 88..101
score: 93.94
coord: 360..379
score: 89.41
coord: 45..58
score: 84.51
coord: 18..33
score: 95.27
coord: 385..401
score: 83.89
coord: 321..342
score: 90.07
coord: 120..128
score: 83.85
coord: 214..226
score: 88.95
coord: 274..289
score: 81.09
coord: 161..172
score: 83.19
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 248..393
e-value: 1.5E-59
score: 213.9
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 263..391
e-value: 3.2E-51
score: 172.7
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 266..383
e-value: 5.8E-60
score: 200.1
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 49..246
e-value: 1.4E-83
score: 293.6
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..265
e-value: 9.9E-131
score: 434.5
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..213
e-value: 1.4E-68
score: 230.9
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..244
NoneNo IPR availableGENE3D1.10.287.600coord: 384..435
e-value: 1.5E-31
score: 107.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..451
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..435
e-value: 0.0
score: 918.469
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 142..148
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 246..436

Blast
[Close]
BLAST of TCONS_00011858-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 426/448 (95.09%), Postives = 442/448 (98.66%), Query Frame = 0 
Query:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFIDLEPSVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDQVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSIDDDGEGED 448
            MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF+DLEP+V+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE+ID VLDRIRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF++YPAPQ+STAVVEPYNS+LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTV+EITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS D + EGE+
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEE 448
The following BLAST results are available for this feature:
BLAST of TCONS_00011858-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+095.09Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
back to top