TCONS_00011769-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011769-protein
Unique NameTCONS_00011769-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011769-protein ID=TCONS_00011769-protein|Name=TCONS_00011769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MSSLSLQMGENNLKRASFYDGLFNCPVCLKIFRSPILQTKCGHRFCQCCL
QNVLQIQPSRCPVDGEALDTNKIFTDTAFQKQIEDVKIICCYSSHGCSWE
GTIQSLTEHREDCEFVNVICEKGCGSTLLKYQLESHICLDPSTPSLQQEL
ALCNSAFMENGEFVDDHDCTMESRPGPEGESSRTMPTSSEEPASPSISGD
GASLKFCKFIKLGCKFKGNRFEVDLHMDIASETHLDLVCKSINEIKTEYI
KKENKVIAKHDNKIKLVQDYICKQNVVIKDLHETNRTLETNSRNMQNQIK
DLASKTEMFMEEITRLKVQANQLQEEMNESRDTNFTGSLLWKIKNFSKHM
QNAVNKTELSVYSPPFFTSRYGYKVRAQLFVNGLGSQTGEYMAIYFHILP
SEHDDILRWPFNHKITFSLLEQTPDQTNVTYTLVPTPNEDSYKRPSDKMS
DGKGFNRFISLDALKKGKYIKNDSIFVKIRVHCKNTSRNHES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006608XLOC_006608Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011769TCONS_00011769Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
IPR012227TNF_rcpt--assoc_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 278..333
NoneNo IPR availableGENE3D1.20.5.400coord: 262..320
e-value: 8.2E-4
score: 18.8
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 24..63
e-value: 4.4E-8
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..198
NoneNo IPR availableCDDcd00270MATH_TRAF_Ccoord: 337..482
e-value: 1.49084E-57
score: 188.585
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 20..89
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 25..64
e-value: 9.8E-5
score: 31.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 25..64
score: 11.102
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 25..63
e-value: 2.21547E-8
score: 49.7516
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 341..464
e-value: 7.1E-11
score: 52.1
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 336..481
score: 23.459
IPR008974TRAF-likeGENE3D2.60.210.10coord: 321..492
e-value: 4.0E-37
score: 127.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 336..482
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 86..146
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 4..489
e-value: 1.4E-99
score: 332.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 7..84
e-value: 2.1E-13
score: 49.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 85..137
e-value: 9.7E-12
score: 44.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 41..50

Blast
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BLAST of TCONS_00011769-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.680e-55
Identity = 125/470 (26.60%), Postives = 214/470 (45.53%), Query Frame = 0 
Query:   25 CPVCLKIFRSPILQTKCGHRFCQCCLQNVLQIQPSRCPVDGEALDTNKIFTDTAFQKQIEDVKIICCYSSHGCSWEGTIQSLTEHREDCEFVNVICEKGCGSTLLKYQLESHICLDPSTPSLQQELALCNSAFMENGEFVDDHD--CTMESRPGPEGESSRTMPTSSEEPASPSISGDGASLKFCKFIKLGCKFKGNRFEVDLHMDIASETHLDLVCKSINEIKTEYIKKENKVIAKHDNKIKLVQDYICKQNVVIKDLHETNRTLETNSRNMQNQIKD-LASKTEMFMEEITRLKVQANQLQEEMNESRDTNFTGSLLWKIKNFSKHMQNAVNKTELSVYSPPFFTSRYGYKVRAQLFVNGLGSQTGEYMAIYFHILPSEHDDILRWPFNHKITFSLLEQT----PDQTNVTYTLVPTPNEDSYKRPS------DKMSDGKGFNRFISLDALKKGKYIKNDSIFVKIRV 481
            CP+C K  R P+  + CGHRFC  CLQ  L     +CP D   LD  KI+ D   + Q+  + I C +S  GC W G ++ L  H   C F  + C   C   L +  L +H+  D   P  + +   C   F  +GE  + H+  C  ES        +R M     + A+           +C    +    + ++++            L + C +   + T         +A+ D    L     C   +V+    ++          M   +++ +     M    ++R + +  +L+ E+ E       G L+WKI ++ + +Q A  K  L  +SP F+T +YGYK++   F+NG GS  G ++++Y  +LP   D++L WPF  ++TFSLL+Q+        +VT T  P PN  ++++P       D+ S G G+ +FIS   ++K  Y+++D++F++  V
Sbjct:   18 CPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHD--CPKRRLKCEFCGCDF--SGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQC---------PRLPVACPNQCGVGT---------VAREDLPGHLKDS--CNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELEEL-SVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAV 462
The following BLAST results are available for this feature:
BLAST of TCONS_00011769-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF45.680e-5526.60TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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