TCONS_00011485-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011485-protein
Unique NameTCONS_00011485-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011485-protein ID=TCONS_00011485-protein|Name=TCONS_00011485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MADNDEEEPKKKGNALPLWGNTHSMNINNLIVTNILASPYFKNELFKLKT
FHEVIDEIYYKVEHLEPWERGSRKTHGQVGMCGGVRGVGAGGIVSSGFCL
LYKLFTLKLTEKQLLQLINHRDSPYIRGLGFMFIRYCQHPNTFWDWYESY
LEDDEEVDPKAGGGSQMTIGQMIRSFLLKPDWYGTLFPRIPVPIHKDINA
RLQEMNLDDERKVYANEGADEEGAEGGYENEDGAKDDAEHSRQDEGSSSK
SRDRSRDRRSSSRRRSRSRERERKRSRSRDRKRSHSRDRKRSRSRERSHG
RHRDRDRGHSDRDSRKRDGDKDRHSHKKHSRDRSRDRGGRRDEKRRSRSR
ERSRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006433XLOC_006433Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011485TCONS_00011485Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 17..198
e-value: 2.2E-54
score: 183.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..355

Blast
[Close]
BLAST of TCONS_00011485-protein vs. Swiss-Prot (Human)
Match: PR38B (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 6.479e-95
Identity = 131/193 (67.88%), Postives = 165/193 (85.49%), Query Frame = 0 
Query:   11 KKGNALPLWGNTHSMNINNLIVTNILASPYFKNELFKLKTFHEVIDEIYYKVEHLEPWERGSRKTHGQVGMCGGVRGVGAGGIVSSGFCLLYKLFTLKLTEKQLLQLINHRDSPYIRGLGFMFIRYCQHPNTFWDWYESYLEDDEEVDPKAGGGSQMTIGQMIRSFLLKPDWYGTLFPRIPVPIHKDINARLQ 203
            K+GN LPLWGN  +MN+N +I+TNIL+SPYFK +L++LKT+HEV+DEIY+KV H+EPWE+GSRKT GQ GMCGGVRGVG GGIVS+ FCLLYKLFTLKLT KQ++ LI H DSPYIR LGFM+IRY Q P   WDW+ES+L+D+E++D KAGGG  MTIG+M+RSFL K +W+ TLFPRIPVP+ K+I+ +++
Sbjct:   42 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIK 234
The following BLAST results are available for this feature:
BLAST of TCONS_00011485-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PR38B6.479e-9567.88Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PR... [more]
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