TCONS_00011470-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011470-protein
Unique NameTCONS_00011470-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011470-protein ID=TCONS_00011470-protein|Name=TCONS_00011470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
GTLCFQSFVWSFSVDLCDLKIMTSSSSFPGGYPGYDDSWNFNTFKENFRV
DIVSLNEKEMEFDMVGIDASIANAFRRILIAEVPSMAIDKVFIFNNSSII
QDEVLAHRLGLIPIFADPRLFNFPPTPVEGKNLTEEEQLHTEPDVHLVFE
LKVKCTMNPEAPKDCVNPEIMYLNNKVTTKDIKWIPIGDQEEQFGVDGIR
PVFDDILIAKLRPGHEIDLRMHCVKGVGCDHAKFSPVATASYRLLPSITL
LDTITDDLADRLIKCFSKDVIKTKTKNGVKKAYVADARKDTGMREIYRDE
VLRDKVKLEKIRDHFIFSVESTGALPPEQLVEEAIKILHAKCQIYVDKLN
SL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006428XLOC_006428Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011470TCONS_00011470Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR001514DNA-dir_RNA_pol_30-40kDasu_CS
IPR033901RNAPI/II_AC40
IPR009025RBP11-like_dimer
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 59..348
e-value: 1.6E-89
score: 313.4
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 61..342
e-value: 7.0E-25
score: 86.2
NoneNo IPR availableGENE3D3.30.1360.10coord: 226..352
e-value: 2.1E-9
score: 36.6
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 91..235
e-value: 6.7E-26
score: 90.8
IPR011262DNA-directed RNA polymerase, insert domainGENE3D2.170.120.12coord: 85..225
e-value: 2.3E-45
score: 153.9
IPR011262DNA-directed RNA polymerase, insert domainSUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 84..236
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved sitePROSITEPS00446RNA_POL_D_30KDcoord: 73..113
IPR033901DNA-directed RNA polymerases I and III subunit AC40CDDcd07032RNAP_I_II_AC40coord: 48..347
e-value: 5.54503E-167
score: 469.767
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 263..350
coord: 46..89

Blast
[Close]
BLAST of TCONS_00011470-protein vs. Swiss-Prot (Human)
Match: RPAC1 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 5.431e-136
Identity = 189/328 (57.62%), Postives = 250/328 (76.22%), Query Frame = 0 
Query:   25 SSSFPGGYPGYDDSWNFNTFKENFRVDIVSLNEKEMEFDMVGIDASIANAFRRILIAEVPSMAIDKVFIFNNSSIIQDEVLAHRLGLIPIFADPRLFNFPPTPVEGKNLTEEEQLHTEPDVHLVFELKVKCTMNPEAPKDCVNPEIMYLNNKVTTKDIKWIPIGDQEEQFGVDGIRPVFDDILIAKLRPGHEIDLRMHCVKGVGCDHAKFSPVATASYRLLPSITLLDTITDDLADRLIKCFSKDVIKTKTKNGVKKAYVADARKDTGMREIYRDEVLRDKVKLEKIRDHFIFSVESTGALPPEQLVEEAIKILHAKCQIYVDKLNSL 352
            ++ FPG Y GYDD+W+ + F++NFRVD+V ++E  +EFDMVGIDA+IANAFRRIL+AEVP+MA++KV ++NN+SI+QDE+LAHRLGLIPI ADPRLF +       +N  +EE   TE D  L F L+V+CT NP A KD  +P  +Y+N+KV T+ + WIP+G+Q + F    IRPV DDILIA+LRPG EIDL MHCVKG+G DHAKFSPVATASYRLLP ITLL+ +  + A+ L +CFS  VI+ +   G K A VA+ R DT  REI+R+E L+  V+L ++RDH+IFSVESTG LPP+ LV EAIK+L  KC+ ++D+L+++
Sbjct:   26 TTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY-------RNQGDEEG--TEIDT-LQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAV 343
The following BLAST results are available for this feature:
BLAST of TCONS_00011470-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAC15.431e-13657.62DNA-directed RNA polymerases I and III subunit RPA... [more]
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