TCONS_00011222-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011222-protein
Unique NameTCONS_00011222-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011222-protein ID=TCONS_00011222-protein|Name=TCONS_00011222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=774bp
KRFVFHGSEHQMESSFLEDLLKGEVNQSEVNQLVGNLENALGSSRPNVVP
SGNVVVSAGKTNSVSQANALPQIITSLKTIPVSKIANNSTAKIGLPKANG
TANANNKTSSPAAPKSSGANIKSSAIVVTTHQQVITPAGVAAASIHGPRI
IKGPKGAVPIAPRLMVTPQQARLLMAARPHHFNPALLQSNLVRMPGGATI
PVMPRMPGHPGMPVPPVMNTQIPGIPRGAIISMTGKPDPRIIRMPGGPSS
IALTQVKGLATSVPGQVNYRFRQIHPTSIPAASVVNGVSSAASAAASASS
ANNVTMMRESVKRLKEFFQNLINLACSPNQPPDIGKMVKELVHNLMQGKV
SEEEFIEKLQKTLKSDPQPNLVHFLKKTLPHLRETIKKQQMQQIIKSNAQ
AVVSASRLKPGQTVNTPITGARLPATPNQVVKKNLTIPEQMLQKQMFNTI
TATTGQTSAITNLMQGSHPRGAAAAHPRGGAAAFHPRGAAAAGPKGAKAG
AANQKNDKQKSSFYSGADDDIIDVTCMAGVNLQEESQKILSTGDFMSYQT
RSIKDKPILNIDILRRMILKKVHLHGIGEVTNDAMAVISHATEHHMRNIL
ERLTACCMHRNDPHKGEVRYETISDVRNQLRVFEEIDEVERKHRESRERE
ILMRVAKSRSRTEDPEQARLKEKAKQMQQEEEELNRKRAANRTALEAIGG
KKKKRKLDEALESLQNASTPGGTSTTSTTTTNSNTNSQTIRTRQNRITMT
DYNLVLETEKNTTKSLALYRSHLR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006282XLOC_006282Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011222TCONS_00011222Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003894TAFH_NHR1
IPR007900TAF4
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 667..697
NoneNo IPR availableGENE3D1.10.20.10coord: 559..603
e-value: 1.8E-9
score: 36.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 656..738
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 467..513
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..118
NoneNo IPR availableSUPERFAMILY158553TAFH domain-likecoord: 303..391
IPR003894TAFH/NHR1SMARTSM00549nervy_1coord: 310..403
e-value: 6.9E-17
score: 72.1
IPR003894TAFH/NHR1PFAMPF07531TAFHcoord: 311..392
e-value: 1.3E-23
score: 82.7
IPR003894TAFH/NHR1PROSITEPS51119TAFHcoord: 308..405
score: 21.478
IPR007900Transcription initiation factor TFIID component TAF4PFAMPF05236TAF4coord: 523..770
e-value: 8.3E-52
score: 176.6
IPR007900Transcription initiation factor TFIID component TAF4CDDcd08045TAF4coord: 518..770
e-value: 7.06113E-55
score: 187.151
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 559..604

Blast
[Close]
BLAST of TCONS_00011222-protein vs. Swiss-Prot (Human)
Match: TAF4 (Transcription initiation factor TFIID subunit 4 OS=Homo sapiens GN=TAF4 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.004e-57
Identity = 117/259 (45.17%), Postives = 163/259 (62.93%), Query Frame = 0 
Query:  518 DDDIIDVTCMAGVNLQEESQKILST-GDFMSYQTRSIKDKPILNIDILRRMILKKVHLHGIGEVTNDAMAVISHATEHHMRNILERLTACCMHRNDPHKGEVRYETISDVRNQLRVFEEIDEVERKHRESREREILMRVAKSRSRTEDPEQARLKEKAKQMQQEEEELNRKRAANRTALEAIGGKKKKRKLD-EALESLQNASTPGGTSTTSTTTTNSNTNSQTIRTRQNRITMTDYNLVLETEKNTTKSLALYRSHLR 774
            DDDI DV  MAGVNL EES +IL+T  + +   TRS KD+  L    L+R IL+    HGI E+  D ++ +SHAT+  ++N++E+++     +N  +K + RYE  SDVR QL+ FE++D++E++ ++ +EREILMR AKSRSR EDPEQ RLK+KAK+MQQ+E    R+R AN TAL AI G +KKRK+D     S    S PG     S   +   T  Q  R R  R+ + D    LE E+ T+ SL LY++ L+
Sbjct:  831 DDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLLQAPLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAI-GPRKKRKVDCPGPGSGAEGSGPGSVVPGS---SGVGTPRQFTRQRITRVNLRDLIFCLENERETSHSLLLYKAFLK 1085
The following BLAST results are available for this feature:
BLAST of TCONS_00011222-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF42.004e-5745.17Transcription initiation factor TFIID subunit 4 OS... [more]
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