TCONS_00011083-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011083-protein
Unique NameTCONS_00011083-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011083-protein ID=TCONS_00011083-protein|Name=TCONS_00011083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
KNVGTTILFERARVKESCGKYQIRKNTRSAIKMLSFTVDAILSSSKTKTT
TTKLKDENHEGIEEDAIRIPPFHHPLPPLSIKIPKAPKIRCISKYGTAIT
DDPYFGRVAVSLENYLLWEMFRKVGTEMVITKSGRRMFPALRFSVSGLHP
SKRYAVAIEIFSADNYRYKYHDSEWCITGKAFPETPCKQRMCVHGDSPAT
GFKWCSNIVSFHKLKITNNTARSNQKQIILNSLQKYQPRLHITEVYSEKD
MLADDIDLEGFPSMTFEFPEATFIAVTAYQSEQITQLKIDNNPFAKGFRD
PTPAEIERTRLINPSLYNMLMKSKEHSTNIKYHLPKTPSPPLNSIPPTLS
CYSKPSITTSPYHPYTRSISNRIDHFPTPRDIEVQRRITRIEKFEKKIYS
IPSYSPLGSPPLHNVGRYGRLSCFCCTGPKIWNHFDHVESKRSEMIA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006210XLOC_006210Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011083TCONS_00011083Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001699Transcription factor, T-boxPRINTSPR00937TBOXcoord: 125..149
score: 63.91
coord: 292..300
score: 89.13
coord: 209..218
score: 70.0
coord: 229..243
score: 64.06
coord: 192..205
score: 48.29
coord: 271..284
score: 62.11
IPR001699Transcription factor, T-boxSMARTSM00425tbox5coord: 107..305
e-value: 6.1E-91
score: 318.1
IPR001699Transcription factor, T-boxGENE3D2.60.40.820coord: 106..305
e-value: 2.5E-75
score: 251.9
IPR001699Transcription factor, T-boxPFAMPF00907T-boxcoord: 110..300
e-value: 1.3E-70
score: 237.3
IPR001699Transcription factor, T-boxPROSITEPS50252TBOX_3coord: 112..300
score: 65.41
IPR001699Transcription factor, T-boxCDDcd00182TBOXcoord: 108..300
e-value: 3.3744E-89
score: 270.998
IPR018186Transcription factor, T-box, conserved sitePROSITEPS01283TBOX_1coord: 117..136
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 108..300

Blast
[Close]
BLAST of TCONS_00011083-protein vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 1.124e-59
Identity = 113/222 (50.90%), Postives = 140/222 (63.06%), Query Frame = 0 
Query:   99 ITDDPYFGRVAVSLENYLLWEMFRKVGTEMVITKSGRRMFPALRFSVSGLHPSKRYAVAIEIFSADNYRYKYHDSEWCITGKAFPETPCKQRMCVHGDSPATGFKWCSNIVSFHKLKITNNTARSNQKQIILNSLQKYQPRLHITEVYSEKDMLADDIDLEGFPSMTFE---FPEATFIAVTAYQSEQITQLKIDNNPFAKGFRDPTPAEIE-RTRLINPSL 316
            + DDP      V+LE   LW+ F K+GTEMVITKSGRRMFP  +  VSGL    +Y + ++I +AD+ RYK+H+S W + GKA PE P  +RM +H DSPATG +W +  V+FHKLK+TNN +       ILNS+ KYQPR HI              D+   P  TF    FPE  FIAVTAYQ+++ITQLKIDNNPFAKGFRD      E R +L  PSL
Sbjct:  101 VEDDP-----KVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMP--KRMYIHPDSPATGEQWMAKPVAFHKLKLTNNIS-DKHGFTILNSMHKYQPRFHIVRAN----------DILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGRREKRKQLTLPSL 304
The following BLAST results are available for this feature:
BLAST of TCONS_00011083-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBX21.124e-5950.90T-box transcription factor TBX2 OS=Homo sapiens GN... [more]
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