TCONS_00011065-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011065-protein
Unique Name	TCONS_00011065-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	672

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011065-protein ID=TCONS_00011065-protein|Name=TCONS_00011065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp
MYQTVRRAGKRYIVSKVNGSTNSTNNHTNDAAVTQNFKQQIKPISLIDGI
TRNSLFAKRTLTSSATPSNLLENVRSCYFCKQQQPHRISRKFLHTVSNGT
LLQPHEIEETLTEQSIKFEKGFTGYLVDSTCCVDSSIFINQRTGESTCRS
CGVKQSWEEFLKEKTEGRQSQDGIKGTLETFIRVGGENSLWESSVDVSEI
NAPESPIYFETFRHFDIRLAPDNTIVYPYYDVSKSKVVKCVSHGNEKRII
EIMNTSHESLFGWNTISPADKTLILTTTELDAMSVFHVTGLPSLSISSTE
ISLHPDLFPFLEQFNKIVLWFPSTYREQESLQNFSRKLDLKRCWKVQCND
SPFSLLEKQQSSEISDSISTSKHMSHDRILTFKDLRSDLFNELMNAKMNA
GVPFTRFPALNEYLKGHRRGELTVFTGATGSGKTTFLSELSLDLCLQGVK
TLWGSFEIRNVRLLNTLMHQFAGFAVEKHMDKFMKWSENFESLPLYFMSY
YGAQDLQDVINTIEYSVYMHDIEHVIVDNLQFMTSTSYSSSDDRFQVMDR
SIAAFRRCASDLNIHITVVVHPRKENDGGSLQTASIYGSAKASQEADNVL
ILQTSDQLSMQITKNRFCGTVGMLPLSFHPDSLCLSGFHRNVETEEEILP
ALRIRRPVSNVKIYRKNNNDNK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006203	XLOC_006203	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011065	TCONS_00011065	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007694	DNA_helicase_DnaB-like_C
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003678	DNA helicase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003678	DNA helicase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13481	AAA_25	coord: 405..576 e-value: 3.8E-22 score: 78.7
None	No IPR available	GENE3D	3.40.50.300		coord: 405..636 e-value: 7.8E-29 score: 100.5
None	No IPR available	SUPERFAMILY	56731	DNA primase core	coord: 205..344
IPR007694	DNA helicase, DnaB-like, C-terminal	PROSITE	PS51199	SF4_HELICASE	coord: 396..642 score: 46.264
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 403..621

Blast

[Close]

BLAST of TCONS_00011065-protein vs. Swiss-Prot (Human)
Match: PEO1 (Twinkle protein, mitochondrial OS=Homo sapiens GN=TWNK PE=1 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 4.286e-127
Identity = 221/536 (41.23%), Postives = 317/536 (59.14%), Query Frame = 0

Query:  136 SIFINQRTGESTCRSCGVKQSWEEFLKEKTEGRQSQDGIKGTLETFIRVGG---ENS-----LWESSVDVSEINAPE-----------SPIYFETFRHFDIR-LAPDNTIVYPYYDVSKSKV-------VKCVSHGNEKRIIEIMNTS-HESLFGWNTISPADKTLILTTTELDAMSVFHVTGLPSLSISSTEISLHPDLFPFLEQFNKIVLWFPSTYREQESLQNFSRKLDLKRCWKVQCNDS-PFSLLEKQQSSEISDSISTSKHMSHDRILTFKDLRSDLFNELMNAKMNAGVPFTRFPALNEYLKGHRRGELTVFTGATGSGKTTFLSELSLDLCLQGVKTLWGSFEIRNVRLLNTLMHQFAGFAVEKHMDKFMKWSENFESLPLYFMSYYGAQDLQDVINTIEYSVYMHDIEHVIVDNLQFMTSTSYSSSDDRFQVMDRSIAAFRRCASDLNIHITVVVHPRKENDGGSLQTASIYGSAKASQEADNVLILQTSDQLS------MQITKNRFCGTVGMLPLSFHPDSLCLS 636
            S+FI++ TG   C +   + SWE+F +   EGR       G  E F+       E+S     +W  ++ + E+   E           + +  +T + F +R L P  ++V+P++    S +        KC   G       I   S + +LFG   IS  D  ++LT+ ELD++++   TGLP+L++      L P L P+LEQF +IV W     R  E+ + F+RKL+ KRC+ V+  D  P  L        +S  + T+    H  I++F+ LR ++  EL N +  AG+ ++RFP LN  LKGHR+GELTVFTG TGSGKTTF+SE +LDLC QGV TLWGSFEI NVRL   ++ QFA   +E  +DK+  W++ FE LPLYFM+++G Q ++ VI+T++++VY++DI HVI+DNLQFM      S+ DR    D  I  FR+ A+D N H+T+V+HPRKE+D   LQTASI+GSAKASQEADNVLILQ    ++      +Q++KNRF G VG+ PL F+ +SL  S
Sbjct:  101 SLFIDKTTGHFLCMTSLAEGSWEDF-QASVEGRGD-----GAREGFLLSKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLVFPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGTTCLPPALLPYLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLSRILRTALPAWHKSIVSFRQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLST-DRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQVSKNRFDGDVGVFPLEFNKNSLTFS 629

The following BLAST results are available for this feature:

BLAST of TCONS_00011065-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011065-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PEO1	4.286e-127	41.23	Twinkle protein, mitochondrial OS=Homo sapiens GN=...	[more]

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TCONS_00011065-protein (polypeptide) - C. hemisphaerica