TCONS_00011040-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011040-protein
Unique NameTCONS_00011040-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length162

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011040-protein ID=TCONS_00011040-protein|Name=TCONS_00011040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MNKIKRAFGQQDDEESIVTENSSLIQISDATSLSWSTRIKCFAFCFIMGV
LCSVLGALLLWRNIRIFAALYAVGAIFSLSSTLFLVGPAKQIKNMFKEKR
IIATIIMLVSLVLTLCAAFWWKKNLLALIFCIIQYLAMTWYALSYIPFAR
DAVKKCFASCMG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006187XLOC_006187Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011040TCONS_00011040Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007305Vesicle transport protein, Got1/SFT2-likePFAMPF04178Got1coord: 47..157
e-value: 3.7E-38
score: 130.3

Blast
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BLAST of TCONS_00011040-protein vs. Swiss-Prot (Human)
Match: SFT2B (Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.579e-61
Identity = 90/164 (54.88%), Postives = 120/164 (73.17%), Query Frame = 0 
Query:    1 MNKIKRAFGQQDDEESIVTENSSLIQISDATSLSWSTRIKCFAFCFIMGVLCSVLGALLLW---RNIRIFAALYAVGAIFSLSSTLFLVGPAKQIKNMFKEKRIIATIIMLVSLVLTLCAAFWWKKNLLALIFCIIQYLAMTWYALSYIPFARDAVKKCFASCM 161
            M+K+K+    QD E+      S L ++ +A+SLSWSTRIK F  CF +G+LCS+LG +LLW   + + +FA  Y  G I S+ ST+FL+GP KQ+K MF+  R+IATI++L+   LTLC+AFWW    LALIFCI+Q LA+TWY+LS+IPFARDAVKKCFA C+
Sbjct:    1 MDKLKKVLSGQDTED-----RSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLALTWYSLSFIPFARDAVKKCFAVCL 159
The following BLAST results are available for this feature:
BLAST of TCONS_00011040-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SFT2B5.579e-6154.88Vesicle transport protein SFT2B OS=Homo sapiens GN... [more]
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