TCONS_00010959-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010959-protein
Unique NameTCONS_00010959-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length147

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010959-protein ID=TCONS_00010959-protein|Name=TCONS_00010959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MSLTDDQLEELKDAFTLFDKKGDDKVESVQIIDILRSLKLNPLTCDVEKV
IKDSGLEGNRVDFPTFASIYEQFKKRPSIANYDDMIEMFKCFDREGSKMV
FGGEFRMVLVNMGDNMNQEQIEKMIAPNENADGYIPYESLLDFVLAK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006160XLOC_006160Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010959TCONS_00010959Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 61..99
e-value: 5.1E-4
score: 19.3
NoneNo IPR availableGENE3D1.10.238.10coord: 1..60
e-value: 8.4E-9
score: 34.7
NoneNo IPR availableGENE3D1.10.238.10coord: 100..144
e-value: 5.6E-6
score: 25.8
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 130..147
score: 5.28
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 6..41
score: 10.58
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 80..115
score: 9.409
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 3..144

Blast
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BLAST of TCONS_00010959-protein vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.321e-32
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 0 
Query:    6 DQLEELKDAFTLFDKKGDDKVESVQIIDILRSLKLNPLTCDVEKVI---KDSGLEGNRVDFPTFASIYEQFKKRPSIANYDDMIEMFKCFDREGSKMVFGGEFRMVLVNMGDNMNQEQIEKMIAPNENADGYIPYESLLDFVLA 146
            DQLEE K+AF LFD+ GD K+   Q  D++R+L  NP   +V KV+   K   L+  RVDF TF  + +   K      Y+D +E F+ FD+EG+  V G E R VL  +G+ M +E++E ++A +E+++G I YE+ L  +L+
Sbjct:   64 DQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILS 207
The following BLAST results are available for this feature:
BLAST of TCONS_00010959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B3.321e-3240.28Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
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