TCONS_00010930-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010930-protein
Unique NameTCONS_00010930-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010930-protein ID=TCONS_00010930-protein|Name=TCONS_00010930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=958bp
IVPGIVEVLDFEPIFFHSQEPFRNKDKQKKIVMDEVENAEVLLQGSNNVE
FDVEIALREENNNYLNSAEGGIAEDLAFIMQNAALHDDKPVKVLNIADYS
SSSDSDSDGDTTTSSSSDLEIVEKPKKQKVTICIISSDDETMETEQQTET
NNNNKKEENIEDCCKYLMKGLVEKVVREERRNKGKDSDDSTDDESEQQFI
TQDDRVNLASIVSSEERVAKEIPRVLHEVLPEELEVEEEEVELSTEDTLV
SIGVVSGVVEKMIVLEAKKDAPALDADTALFLSKDKYLGKVFDTFGPVKT
PFYSIRAPSKLDCTQIAKGTKVFFVPFNQNLTRYIFVEELKKLKGSDASW
KNDCEPPPELLDYSDDEQEREAKKKGKNRKRQMYEQNEENQQNSKKQPSA
STNRRQRKMKAIDLTKHGNPLLDHARLMNDPRANKAAALTPREPPRQQEV
PLCDVMPIEVNDYDNSKIMQESRLDYVSPLHKTNPKPKWSSNDNNSSRGR
GRGRGTGPSTQRQGSSWNRQNSHEQQQQPNFNPNHQQNTNSQPPPPPNGP
HQFHHQPNYSQPPGNQYQYQPPYNNSQPPPPPQNYQWSQQNSQQPPHQIQ
HQNHYSQPHPNYHQNNYPPPPNNCQPPNNYGSAQSGTQPPQSNFQPPPNI
PQPQDKPQAQAPKENSQPPNESQKSKKEVRHQYNPSQNHPLLRHQSTGEK
GPMNDEGPQSHGPTSHPKNQGPNLNQSQGPNQPQQNQFPNPPPQNHGPNP
PPQNQGPNPPLKNHGPNPHQGHGPNPPPPNNYQGPPQHQPYHPQPQNNFG
PPPPPHQNNGWNPNQNNPPYMNQHPPNYNARPPQPPNQQNGGPGYHYNYN
QQTYPNQGQPSNWNHQQPPPNGPPNQHHNQNYYSTPPPNQVPPPPNHGQN
FNNQNTFQTHLPPNQGPNLNNQNAPTQEQGVRAQPHYQNQSALYNNRGEV
TNPKKTTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006136XLOC_006136Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010930TCONS_00010930Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR009000Transl_B-barrel
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 235..379
e-value: 3.8E-38
score: 130.6
NoneNo IPR availableGENE3D2.40.10.230coord: 222..325
e-value: 2.3E-23
score: 81.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..407
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 478..958
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 250..324

Blast
[Close]
BLAST of TCONS_00010930-protein vs. Swiss-Prot (Human)
Match: NAF1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens GN=NAF1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.949e-33
Identity = 77/191 (40.31%), Postives = 117/191 (61.26%), Query Frame = 0 
Query:  228 EVLPEEL-EVEEEEVELSTEDTLVSIGVVSGVVEKMIVLEAKKDAPALDADTALFLSKDKYLGKVFDTFGPVKTPFYSIRAPSK--LDCTQIAKGTKVFFVPFNQNLTRYIFVEELKKLKGSDASWKNDCEPPPELLDYSDDEQEREAKKKGKN----RKRQMYEQNE------ENQQNSKKQPSASTNRR 405
            E+L  EL  VEE  + L  +  L  +G+VS ++E+++++E+  + P ++ +T +F S  +  GK+F+ FGPV  PFY +R  S   ++   I     ++F P  ++ T+YIF E+LK+ KGSDASWKND EPPPE LD+SDDE+E+EAK++ K+    RK+   E NE      E  QN     SAS + +
Sbjct:  176 ELLLNELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMKDFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQGRKKLKSEFNEPGEDFTEVHQNWNAHSSASEHAK 366
The following BLAST results are available for this feature:
BLAST of TCONS_00010930-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAF17.949e-3340.31H/ACA ribonucleoprotein complex non-core subunit N... [more]
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