TCONS_00010854-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010854-protein
Unique Name	TCONS_00010854-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	402

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010854-protein ID=TCONS_00010854-protein|Name=TCONS_00010854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
QKTNIGITFSTRMVKYMMLAMTFMVGFIMTAFMTVNLNLFITGAGNSNPT
KHVYIHNNKQNEERQNLSRHFEKFETYLKEIRKEMTSVKEGVYGMKAWEK
IQIDRMELWKTLDEKSPPKADLRNPHIVLDDVKLDCSTRYDLIILISSHA
AHFERREKIRRTWGNASMWITQNKKWKVVFVLGVIDNKNTMLKIKKESKT
HGDVILEDVPESFYQLSFKVMVGLHWAFFALKFDFVLKGDDDVFVHVDRV
LAKLDGDFRNEHYIGSVMSGQPVERKGRYGLTAEEHKNDRFDPYCSGGGF
ILSNVAISRMISLFDWLTPLKIDDAYIGHLVFRSGYKAKSVRGFYMWNNW
CEYNEHLMVTHPVKQDRCLRFLEQRALIENGMMVDKQNLTSQLYGLPSSK
KT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006095	XLOC_006095	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010854	TCONS_00010854	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002659	Glyco_trans_31

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008378	galactosyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0008378	galactosyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002659	Glycosyl transferase, family 31	PFAM	PF01762	Galactosyl_T	coord: 154..335 e-value: 5.6E-32 score: 111.0

Blast

[Close]

BLAST of TCONS_00010854-protein vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.171e-28
Identity = 73/226 (32.30%), Postives = 111/226 (49.12%), Query Frame = 0

Query:  123 RNPHIVLDDVKLDCSTRYDLIILISSHAAHFERREKIRRTWGNASMWITQNKKWKVVFVLGVIDNKNTMLKIKKESKTHGDVILEDVPESFYQLSFKVMVGLHWAFFAL-KFDFVLKGDDDVFVHVDRVLAKLDG-DFRNEHYIGSVMSGQPVER--KGRYGLTAEEHKNDRFDPYCSGGGFILSNVAISRMISLFDWLTPLKIDDAYIGHLVFRSGYKAKSVRGF 344
            RN  I+L+     CS    L++ I S   H ERR  IR TWG    W  + ++ K+VF+LGV  +      +  ES+   D++  D  E F+ L+ K +    W   A  +  F+LKGDDDVFVHV  VL  LDG D   +  +G V+      R  K +Y +    ++   + PY  GGG+++S   + R+ ++ +      IDD ++G  + R G       GF
Sbjct:  103 RNFSILLEPS--GCSKDTFLLLAIKSQPGHVERRAAIRSTWGRVGGW-ARGRQLKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPAQDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHHAGF 325

The following BLAST results are available for this feature:

BLAST of TCONS_00010854-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010854-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B3GN4	4.171e-28	32.30	N-acetyllactosaminide beta-1,3-N-acetylglucosaminy...	[more]

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TCONS_00010854-protein (polypeptide) - C. hemisphaerica