TCONS_00010782-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010782-protein
Unique NameTCONS_00010782-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010782-protein ID=TCONS_00010782-protein|Name=TCONS_00010782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
STLKTKINISKMKNTIREECAYKNLSERFIYTDKRKFNLQYSQLYAIRLM
VMRPKLETAAKKKWGDDINIVKLSDITRGEECIIVGTIFRKMELQPSVLK
EISSEERVLAVPPTTKLASNDDELILEGDQQRIALTGSFPLSTAVTGTIV
ALSGKEIEGGKFEVADHCFASIPIMSNPSPKIQQDKYVLFISGLEIGSKQ
GNLLNTQLLFDLIAGQLSMGEDTGRQICRVVIAGNTLSKDTQDKESEKVA
KYLTKHVQAKTVDAIKTLDELLTQLGSCVPVDVMPGEYDPTNQFLPQQPL
HKCMLPSAFSYSTVQSVTNPYDIEIDGRRILGTSGQNVANIYQFAGMEKR
LQIMESNLNASHISPTSPDTLSCYPYFEKDPFVLEDCPHIYFAGNQPRLE
SKTIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006056XLOC_006056Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010782TCONS_00010782Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_alpha/epsilon_bsu
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007185DNA polymerase alpha/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 188..397
e-value: 5.6E-41
score: 140.1
NoneNo IPR availableCDDcd07387MPP_PolD2_Ccoord: 187..405
e-value: 1.27336E-111
score: 329.601

Blast
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BLAST of TCONS_00010782-protein vs. Swiss-Prot (Human)
Match: DPOD2 (DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.051e-127
Identity = 194/390 (49.74%), Postives = 262/390 (67.18%), Query Frame = 0 
Query:   22 YKNLSERFIYTDKRKFNLQYSQLYAIRLMVMRPKLETAAKKKWGDDINIVKLSDITRGEECIIVGTIFRKMELQPSVLKEISSEERVLAVPPTTKLASNDDELILEGDQQRIALTGSFPLSTAVTGTIVALSGKEIEGGKFEVADHCFASIPIMSNPSPKIQQDKYVLFISGLEIGSKQGNLLN-TQLLFDLIAGQLSMGEDTGRQ-----ICRVVIAGNTLSKDTQDKESEKVAKYLTKHVQAKTVDAIKTLDELLTQLGSCVPVDVMPGEYDPTNQFLPQQPLHKCMLPSAFSYSTVQSVTNPYDIEIDGRRILGTSGQNVANIYQFAGMEKRLQIMESNLNASHISPTSPDTLSCYPYFEKDPFVLEDCPHIYFAGNQPRLESKTIK 405
            Y N S+ F    +R F+ QY+ +YA RL+ MRP LE  A++ WG  + + KL ++   E+C +VGT+F+ M LQPS+L+E+S E  +L  PP +K    DDEL+LE + QRI L G+  +S  VTGT++A+ G   + GKF V D+CFA +     P+P +  D++VL +SGL +G   G  L  TQLL D++ GQL    D G Q     + RV++AGN LS  TQ ++S   AKYLTK  QA +V+A+K LDE+L QL + VPVDVMPGE+DPTN  LPQQPLH CM P A +YST+Q VTNPY   IDG R LGTSGQNV++I++++ ME  L+I+E  L   HISPT+PDTL CYP+++ DPF+  +CPH+YF GN P   SK I+
Sbjct:   32 YTNSSQPF-RLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADL-APQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLG---DEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIR 416
The following BLAST results are available for this feature:
BLAST of TCONS_00010782-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOD21.051e-12749.74DNA polymerase delta subunit 2 OS=Homo sapiens GN=... [more]
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