TCONS_00010781-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010781-protein
Unique Name	TCONS_00010781-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	471

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010781-protein ID=TCONS_00010781-protein|Name=TCONS_00010781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MSFNFGTPSTSASTGGGFSFGSTAKPAASTTGFSFGGATTSSSAAPAAGG
FSFGAKPAASVAPVAGGGLSFGAKPAATAAPGGFSFGSTPASTATAAPTA
GGFSFGAKPTATATTTPSSGFSFGGGATSTATTSAAAPSSGFSFGSSAAA
ATTTTASSFSFGGAPVAKSAPAPAFGTPASSAATSAAKPTGFSFGTPAAS
SSTTTTTASGFSLSTTATSAAASTGGFKLGGAATTSATTLGAGLKLGAST
ATTSGSATATASALSTSTLKQVSYKSLEETVDKWLHDLNEQEKIFLNQAA
QVNMWDRQLIENGEKISETHNEVERVKAEQSRLDRELDFILSQQEELEEL
LNPIEAQLNSQQMISYAQHADIERERTYGLAENIDSQLKQMMQSLNEIID
HVNTSNTTPKNQKDDTMVQISKILNAHMDSLQWIDQNTNKLKQRVKEVSQ
TMDTQRREQXSKRSHGLLTMD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006055	XLOC_006055	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010781	TCONS_00010781	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007758	Nucleoporin_NSP1_C

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 316..336
None	No IPR available	COILS	Coil	Coil	coord: 274..294
None	No IPR available	COILS	Coil	Coil	coord: 438..458
IPR007758	Nucleoporin, NSP1-like, C-terminal	PFAM	PF05064	Nsp1_C	coord: 264..370 e-value: 7.6E-31 score: 106.2

Blast

[Close]

BLAST of TCONS_00010781-protein vs. Swiss-Prot (Human)
Match: NUP62 (Nuclear pore glycoprotein p62 OS=Homo sapiens GN=NUP62 PE=1 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 1.987e-82
Identity = 200/502 (39.84%), Postives = 264/502 (52.59%), Query Frame = 0

Query:    9 STSASTGGGFSFGSTAKPAAST--TG-FSFGGATTSSSAAP--------AAGGFSFGAKPAASVAPVAGGGLSFGAKPAATAAPGGFSFGSTPASTATA---------APTAGGFSFGAKPTATATTTPSSGFSFGGGATSTATTSAAAPSSGFSFGSSAAAATTTTASSFSFGGAPVAKSAPAPAFGT-PASSAATSAAKPTGFSFGTPAASSSTTTTTASGFSLSTTATSAAASTGG---FKLGG---------------------AATTSATTLGAGLKLGASTATTSGSATAT------ASALSTSTLKQVSYKSLEETVDKWLHDLNEQEKIFLNQAAQVNMWDRQLIENGEKISETHNEVERVKAEQSRLDRELDFILSQQEELEELLNPIEAQLNSQQMISYAQHADIERERTYGLAENIDSQLKQMMQSLNEIIDHVNTSNTTPKNQKDDTMVQISKILNAHMDSLQWIDQNTNKLKQRVKEVSQTMDTQRREQ 459
            S S S  GGF+FG+  +PA ST  TG FS    T ++            A+GG  F     AS        LS  A   A A P GF  GS+  + A +         APT  GF FG   T+ A  T S GFSF GG+T        A  SGF+ GS+  +A  T  ++  F  A  A +         P  +A  ++  P+ F+    A +SS TT    G SL T  T+A A T G   F L                        +++S T     LK  A     S +A A        +A   +    ++Y  LE  ++KW  +L +QE+ FL QA QVN WDR LIENGEKI+  H EVE+VK +Q RLD+ELDFILSQQ+ELE+LL+P+E  +  Q    Y QHAD ERE+TY LAENID+QLK+M Q L +II+H+NTS   P +   D + QI KILNAHMDSLQWIDQN+  L+++V+EV++  + +R+EQ
Sbjct:   33 SFSTSGTGGFNFGAPFQPATSTPSTGLFSLATQTPATQTTGFTFGTATLASGGTGFSLGIGASKL-----NLSNTAATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAPT--GFVFGPSTTSVAPATTSGGFSFTGGST--------AQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATT----GLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTSG-APAD-TSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQ 513

The following BLAST results are available for this feature:

BLAST of TCONS_00010781-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010781-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUP62	1.987e-82	39.84	Nuclear pore glycoprotein p62 OS=Homo sapiens GN=N...	[more]

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TCONS_00010781-protein (polypeptide) - C. hemisphaerica