TCONS_00010390-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010390-protein
Unique NameTCONS_00010390-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length161

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010390-protein ID=TCONS_00010390-protein|Name=TCONS_00010390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MAQKKLSGVLKMYVAAGKAAPSPPLGPALGQRGINIMQFCKDFNERTKDY
KQGVPIPTRVVYKDRKFDFTISQPPATYFLKQAAGVEKGSSNPGREMIGS
VTLKQIYEIALVKGKDEGFKNTDLQGVCKCLIDSAHSMGIEIINDRSEDM
TTEESTSAVAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005840XLOC_005840Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010390TCONS_00010390Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR020783Ribosomal_L11_C
IPR020784Ribosomal_L11_N
IPR006519Ribosomal_L11_bac-typ
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 10..143
e-value: 5.3E-64
score: 228.6
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 6..144
score: 27.873
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 10..142
e-value: 3.39255E-61
score: 186.503
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 73..142
e-value: 1.4E-23
score: 83.1
IPR020783Ribosomal protein L11, C-terminalGENE3D1.10.10.250coord: 73..142
e-value: 3.6E-20
score: 71.5
IPR020783Ribosomal protein L11, C-terminalSUPERFAMILY46906Ribosomal protein L11, C-terminal domaincoord: 68..142
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 11..67
e-value: 3.1E-25
score: 87.6
IPR020784Ribosomal protein L11, N-terminalGENE3D3.30.1550.10coord: 4..72
e-value: 1.8E-29
score: 100.9
IPR020784Ribosomal protein L11, N-terminalSUPERFAMILY54747Ribosomal L11/L12e N-terminal domaincoord: 4..72
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMTIGR01632TIGR01632coord: 4..143
e-value: 2.9E-52
score: 174.3
NoneNo IPR availablePRODOMPD001367coord: 39..74
e-value: 8.0E-7
score: 124.0

Blast
[Close]
BLAST of TCONS_00010390-protein vs. Swiss-Prot (Human)
Match: RM11 (39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.962e-53
Identity = 79/159 (49.69%), Postives = 110/159 (69.18%), Query Frame = 0 
Query:    5 KLSGVLKMYVAAGKAAPSPPLGPALGQRGINIMQFCKDFNERTKDYKQGVPIPTRVVYK-DRKFDFTISQPPATYFLKQAAGVEKGSSNPGREMIGSVTLKQIYEIALVKGKDEGFKNTD--LQGVCKCLIDSAHSMGIEIIND-RSEDMTTEESTSAV 159
            ++ GV++  V AG A P PPLGP LGQRG++I QFCK+FNERTKD K+G+P+PT+++ K DR F+  I QP  +YFLK AAG+EKG+   G+E+ G VTLK +YEIA +K +DE F   D  L  V + +I SA S+GI ++ D  SE++   +   A+
Sbjct:   15 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAI 173
The following BLAST results are available for this feature:
BLAST of TCONS_00010390-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM115.962e-5349.6939S ribosomal protein L11, mitochondrial OS=Homo s... [more]
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