TCONS_00010265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010265-protein
Unique NameTCONS_00010265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010265-protein ID=TCONS_00010265-protein|Name=TCONS_00010265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MLSIQDVLRPNIININGRRYRQLPIKSLNNEQQSDYTENLASYVEEDTYY
DEPNTCSNQPEWQVEQTHNGYEIVIEDLPMFYYKFIIGKGGSKKKEIERS
SNASIKLPPKGSQGNVIISGRHKCDVVSGRNQLQTIIDLHRTEQPATHFL
CIALDADHMDEKFADFKEKVLELNARGVDGSIFQEAKRLHLTLSLTPFLN
DAEVNELLPTISDTVNQIKQQYLPEELVKIHLRGIEYMNDDPGEVDVLYA
KVSLPDSSNRLQKFVDEVVDALSTNGLVKKQYDHVKLHATIMNTLFRENK
TPKEERTRNQKFKERVTFDATKILELYGDYVFGEVTFNKLDISLKGSYDK
DGRYKRVVSIPLLSKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005773XLOC_005773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010265TCONS_00010265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR009210ASCC1
IPR019510Kinase-A_anchor_nucl_local_sig
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 67..138
e-value: 1.7E-4
score: 30.9
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 81..123
e-value: 1.3E-7
score: 31.3
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 77..142
e-value: 1.2E-9
score: 37.4
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 77..138
IPR009210Activating signal cointegrator 1 complex subunit 1PIRSFPIRSF027019Euk_LigTcoord: 5..365
e-value: 2.4E-73
score: 244.9
IPR019510Protein kinase A anchor protein, nuclear localisation signal domainPFAMPF10469AKAP7_NLScoord: 147..362
e-value: 2.4E-47
score: 161.4
NoneNo IPR availableGENE3D3.90.1140.10coord: 144..366
e-value: 1.4E-41
score: 142.1
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 78..133
score: 10.043
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 82..121
e-value: 1.8945E-7
score: 46.7361

Blast
[Close]
BLAST of TCONS_00010265-protein vs. Swiss-Prot (Human)
Match: ASCC1 (Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens GN=ASCC1 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.027e-67
Identity = 132/406 (32.51%), Postives = 211/406 (51.97%), Query Frame = 0 
Query:    6 DVLRPNIININGRRYRQLPIKSLNNEQQSDYTENLASYVEEDTYYDEPNTCSNQP--EWQVEQTHNGYEIVIEDLPMFY---------------------------YKFIIGKGGSKKKEIERSSNASIKLPPKGSQGNVIISGRHKCDVVSGRNQLQTIIDLHRTEQPATHFLCIALDADHMDEKFADFKEKVLELNA--RGVDGSIFQEAKRLHLTLSLTPFLNDAEVNELLPTISDTVNQIKQQYLPE----ELVKIHLRGIEYMNDDPGEVDVLYAKVSLPDSSNRLQKFVDEVVDALSTNGLVKKQYDHVKLHATIMNTLFRENKTPKEERTRNQK-------FKERVTFDATKILELYG---DYVFGEVTFNKLDISLKGSYDKDGRYKRVVSIPLLSKS 366
            +VLRP +I I+GR YR+ P++    + + D          E+ +Y     C+++P   ++VEQT  G+   +    + Y                            + I+GK G  +K+IE  +  SI +P  G  G ++I+G+H+  V+S R ++  ++D  R +QP THFL   L+   + E F  F+E+VL   +   GVD SIFQ  K+LHLT+ +   L++ E+ +      + + Q K++++ +    + +++ + GIEYMNDDPG VDVLYAKV + D SNRLQ+ VD V++    +GL+ K+++ VKLHAT+MNTLFR  K P  E   N         FKER +FD   IL+ +       + +      ++ L GS D      +V  I  +S +
Sbjct:    2 EVLRPQLIRIDGRNYRKNPVQEQTYQHEED----------EEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQ----TCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFR--KDPNAEGRYNLYTAEGKYIFKERESFDGRNILKSFALLPRLEYNDAISAHCNLCLPGSSDSPASASQVAGITGVSDA 391
The following BLAST results are available for this feature:
BLAST of TCONS_00010265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASCC19.027e-6732.51Activating signal cointegrator 1 complex subunit 1... [more]
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