TCONS_00010253-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010253-protein
Unique NameTCONS_00010253-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010253-protein ID=TCONS_00010253-protein|Name=TCONS_00010253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp
MADSGLRIVKIIGLLLAILTFIFVIVACVMNSWSECTDMGYSSGLWFYKD
KSTDMRSLYEENFIRAIQPDAKCTGKVTGNWNTDDTKCNTAFKCDSNSQV
SETKSCSSNYQFDKTDGTCKETFVTKIQISGCQHPDCYGKVDGKYFLDKS
TCDGGYTCSASGLVRGANVTCSGDQLFNSATGSCTIRSTDGSTCKAYYVC
QGSSDSTLSTSTCSSGTYFNGTMCIGMTISGNDNTAPASCKHEDCVGKVD
GPHRSGTHTTGYTYDVQCKKSYICKNSGQTRENLPDCTGSLQYTPTGSPP
TCAAAPQSGCVASSCSGKADGYHITDSGTCRNYIKCRQGVEESTVTCPVN
NFAIVSTLAASCSFHRKDSTCSNYYTCSGTTVTEQTCASGKYYNEGSKAC
EDPVSSGGGLVSTLPVNCKHADCPSDGTYYAKTGGTINTACNNAYTCASN
VRTTLAQCPAGQQYQLTPTVTCTTTHQSGCDHADCSGKSDGYHVTDGTTC
KNYINCENNGAKDNTKSGTCTAGRVFLVSTGTCSTTTPSGSTTCKDPRCD
ANPNHKAHQSTTQNPGLRNCQTWYECKNGFYTEGTCGTNEYYDLSDGVCK
GTFPYTGTDHASRAFTCKDDRCFGLSDGKHWLNSDCFGYKECTNQIQTSS
TTCPSGTLYDPNGKSCVAYDNGINGKHAGCKINGGHGAWGAWSTCTNNKG
NSYGLRTRSRPCDNPTKKNGGAACTGGASEQTICWLCPTQELMEVTRFFV
ILAIALGGLGSIFALNTFCVSSSMYPTVLSSLCQLGVFVFALGSAVAYTS
IYPKDVDSCFTTGAGWTLAIVAAVFAFIGFIVWIVAAIKVYKSKATGKVG
ARE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005768XLOC_005768Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010253TCONS_00010253Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR002557Chitin-bd_dom
IPR001190SRCR
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO:0005044scavenger receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
molecular_function GO:0008061 chitin binding
molecular_function GO:0005044 scavenger receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 686..738
e-value: 0.0056
score: 25.9
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 682..740
e-value: 9.7E-8
score: 31.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 683..738
score: 8.513
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 682..735
IPR002557Chitin binding domainSMARTSM00494chi_10coord: 71..134
e-value: 35.0
score: 1.6
coord: 360..407
e-value: 0.055
score: 22.6
coord: 547..606
e-value: 4.1
score: 12.9
coord: 421..482
e-value: 15.0
score: 6.1
coord: 615..673
e-value: 0.43
score: 19.6
coord: 135..196
e-value: 8.0
score: 9.3
coord: 483..546
e-value: 2.4
score: 15.7
IPR002557Chitin binding domainPFAMPF01607CBM_14coord: 365..405
e-value: 1.1E-6
score: 28.6
coord: 485..536
e-value: 1.9E-5
score: 24.6
IPR002557Chitin binding domainGENE3D2.170.140.10coord: 480..552
e-value: 0.045
score: 13.1
coord: 125..188
e-value: 0.16
score: 11.4
coord: 613..681
e-value: 2.1E-4
score: 20.6
coord: 553..612
e-value: 0.033
score: 13.6
coord: 189..245
e-value: 0.083
score: 12.3
coord: 356..420
e-value: 1.3E-5
score: 24.5
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 482..546
score: 10.704
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 312..373
score: 10.196
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 553..599
score: 7.774
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 70..119
score: 8.966
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 134..196
score: 9.778
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 242..310
score: 6.886
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 374..400
score: 6.264
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 420..480
score: 9.207
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 619..682
score: 9.6
IPR002557Chitin binding domainSUPERFAMILY57625Invertebrate chitin-binding proteinscoord: 366..405
IPR002557Chitin binding domainSUPERFAMILY57625Invertebrate chitin-binding proteinscoord: 560..599
IPR002557Chitin binding domainSUPERFAMILY57625Invertebrate chitin-binding proteinscoord: 619..671
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 5.0
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 186..316
score: 7.622

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010253-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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