TCONS_00010205-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010205-protein
Unique NameTCONS_00010205-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010205-protein ID=TCONS_00010205-protein|Name=TCONS_00010205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
RLQKNTKQKAGKEEYVHSVKMFDSNDTVSGEPLSTIEILIEDGENNEESE
EAGPSERKGKNSAKYNGFTMFYQKICNSIGENAKKDKQKAPSIKEMAKIA
AGKWRALDDNRKKDWNRSAQLERENRDCDVSRLECERCKNIFSREKDKRY
HEQFCYEVECPECHKKFRNGILMKKHLKTHTKTFECAECSKRFGMKQSLD
RHLLSHGAKSYECFCGKKFTTKGNYTRHQKSIH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005726XLOC_005726Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010205TCONS_00010205Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR009071HMG_box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 184..206
e-value: 0.032
score: 23.4
coord: 133..153
e-value: 310.0
score: 0.1
coord: 158..180
e-value: 0.016
score: 24.4
coord: 211..233
e-value: 2.8
score: 16.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 160..180
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 186..206
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 158..185
score: 10.138
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 211..233
score: 9.993
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 184..211
score: 11.053
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 182..230
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 60..129
e-value: 6.0E-5
score: 23.5
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 44..143
e-value: 3.9E-7
score: 29.7
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 65..124
NoneNo IPR availableGENE3D3.30.160.60coord: 170..195
e-value: 3.2E-11
score: 42.7
coord: 144..169
e-value: 5.6E-5
score: 22.7
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 215..233
e-value: 0.0017
score: 18.6
coord: 159..180
e-value: 0.0072
score: 16.6
NoneNo IPR availableGENE3D3.30.160.60coord: 196..218
e-value: 8.2E-11
score: 41.6
NoneNo IPR availableGENE3D3.30.160.60coord: 219..233
e-value: 0.037
score: 13.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010205-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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