TCONS_00010154-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010154-protein
Unique NameTCONS_00010154-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010154-protein ID=TCONS_00010154-protein|Name=TCONS_00010154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MATEELCLICWARGRGGMNLGPGGISANFNTDNSTYQINANNTRNHNMGG
NGRKGAMNMNGGRRMGVNRMTVANSKTGHSVHMRGLPFESTAADVIRFFA
PLQPVDIRLLYESNTGRPKGECDVDFTTHHDAEEAMKKDKQNMGHRYIEL
FLKSTIHGNGKWNNNNNIIGKSSPPLLLSHNNNNRSSIIQQPNLNNIYAG
GFNITKQQQTTNQNRFNTNSLPPIGCNFNNNTPSSLGFVRKPPPPPSSVD
PFGANRVTRDDLNFKDTSRDLDLLSRTIHNGSQTIQNGCKSNGVQSFYSN
AII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005703XLOC_005703Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010154TCONS_00010154Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 80..151
e-value: 4.2E-11
score: 52.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..148
e-value: 1.4E-8
score: 34.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 79..155
score: 8.791
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 74..156
NoneNo IPR availableGENE3D3.30.70.330coord: 68..156
e-value: 4.0E-12
score: 45.7

Blast
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BLAST of TCONS_00010154-protein vs. Swiss-Prot (Human)
Match: HNRH1 (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 1.100e-22
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 0 
Query:   74 NSKTGHSVHMRGLPFESTAADVIRFFAPLQPVDIRLLYESNTGRPKGECDVDFTTHHDAEEAMKKDKQNMGHRYIELFLKSTIHGNG 160
             S TGH VHMRGLP+ +T  D+  FF+PL PV + +    + GR  GE DV+F TH DA  AM KDK NM HRY+ELFL ST   +G
Sbjct:  284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASG 369
The following BLAST results are available for this feature:
BLAST of TCONS_00010154-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRH11.100e-2254.02Heterogeneous nuclear ribonucleoprotein H OS=Homo ... [more]
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