TCONS_00010103-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010103-protein
Unique Name	TCONS_00010103-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	279

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010103-protein ID=TCONS_00010103-protein|Name=TCONS_00010103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MKITEMMHPITPLAVRYLNSPPMECRTSGCHCQQPVIPSPKCNCHQCKYS
AIYDSFKERERYLPYGRHESSPRSRPIKRISYDDYPSMSSVRGYRMEYER
HLAERHMIHRRYDDSLRFRKPLSPPSLVIKEEKPILYRPSPVSPASSLSP
TYRQLSPKSPGVNYRLMSPPSEPTTSRKDFKPPQRVRQKRRFQCMYCEKS
FGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKC
GVCDKSFTQRVTLRSHMRTHSNSKKFFEK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005663	XLOC_005663	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010103	TCONS_00010103	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 220..242 e-value: 0.0029 score: 26.8 coord: 192..214 e-value: 0.047 score: 22.8 coord: 248..270 e-value: 5.0E-5 score: 32.7
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 194..214
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 250..270
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 222..242
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 220..247 score: 17.35
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 248..275 score: 14.108
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 192..219 score: 16.352
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 218..270
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 188..229
None	No IPR available	GENE3D	3.30.160.60		coord: 205..225 e-value: 6.2E-16 score: 58.0
None	No IPR available	PFAM	PF00096	zf-C2H2	coord: 222..242 e-value: 1.3E-4 score: 22.2 coord: 248..270 e-value: 5.2E-7 score: 29.7 coord: 192..214 e-value: 6.7E-4 score: 19.9
None	No IPR available	GENE3D	2.40.155.10		coord: 240..277 e-value: 7.8E-22 score: 78.0
None	No IPR available	GENE3D	3.30.160.60		coord: 226..239 e-value: 1.2E-15 score: 56.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..187
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 23..204 e-value: 9.8E-12 score: 44.5

Blast

[Close]

BLAST of TCONS_00010103-protein vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.053e-25
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 0

Query:  192 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 274
            ++C  C K+FG+ S LR HHR H+GE+P+ C  CG+AFSQ SNLR H R HTGEKP++C  C K+F Q+  LR H RTH+  K
Sbjct:  534 YKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEK 616

HSP 2 Score: 99.7525 bits (247), Expect = 1.367e-23
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0

Query:  192 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 274
            ++C +C ++F + S+LR HHRTH+GE+P+ C  CGK F Q SNLR H R HTGEKP++C  C K+F+++  LR H RTH+  K
Sbjct:  562 YKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEK 644

HSP 3 Score: 99.7525 bits (247), Expect = 1.447e-23
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 0

Query:  170 PSEPTTSRKDFKPPQRVRQKRR-------FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 274
            P E     K F     +R  RR       ++C  C K+F   S LR HHRTH+GE+P+ C  CGKAF Q S LR H RIHTGEKP+KC  C ++F+Q+  LR H RTH+  K
Sbjct:  477 PFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEK 588

HSP 4 Score: 97.0561 bits (240), Expect = 1.251e-22
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 0

Query:  192 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 274
            +QC  C K+F + S+LR H RTH+GE+P+ C  CGKAFS+ S LR H R HTGEKP+ C  C ++F+Q+  LR H RTH+  K
Sbjct:  590 YQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEK 672

HSP 5 Score: 97.0561 bits (240), Expect = 1.350e-22
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 0

Query:  192 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTH 270
            ++C  C K+F + S LR H RTH+GE+P+ C  CG+AFSQ SNLR H R HTGEKP+KC  C ++F+Q+ +LR H + H
Sbjct:  618 YECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAH 696

HSP 6 Score: 91.2781 bits (225), Expect = 1.087e-20
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 0

Query:  192 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 274
            F+C  C KSF   S L  H RTH+GE+PF C  CGK+FS  S LR H R HTGE+P+KC  C K+F  +  LR H RTH+  K
Sbjct:  450 FECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEK 532

HSP 7 Score: 91.2781 bits (225), Expect = 1.184e-20
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 0

Query:  158 KSPGVNYRLMSPPSEPTTSR--------KDFKPPQRVRQKRR-------FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSK 274
            KS  +N  L+ P    T  +        K F    R+R+ +R       ++C  C+K+F   S LR H RTH+GE+PF C  CGK+F+  S L  H R HTGEKPF+C  C KSF+    LR+H RTH+  +
Sbjct:  373 KSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGER 504

HSP 8 Score: 89.7373 bits (221), Expect = 4.026e-20
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 0

Query:  192 FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSKKF 276
            ++C  C K+F + S LR H RTH+GE+P+ C  C KAFS  S LR H R HTGEKPF+C  C KSF  +  L  H RTH+  K F
Sbjct:  394 YECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPF 478

HSP 9 Score: 85.1149 bits (209), Expect = 1.432e-18
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 0

Query:  164 YRLMSPPSEPTTSRKDFKPPQRVRQKRR-FQCMYCEKSFGKSSHLRDHHRTHSGERPFGCRFCGKAFSQFSNLRTHLRIHTGEKPFKCGVCDKSFTQRVTLRSHMRTHSNSKKF 276
            Y    P +E  + +  F   Q+V  + + ++   C KS   +SHL    ++H+GE+P+ C  CGKAFS+ S LR H R HTGEKP+KC  CDK+F+ +  LR H RTH+  K F
Sbjct:  337 YSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPF 450

The following BLAST results are available for this feature:

BLAST of TCONS_00010103-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010103-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZN782	3.053e-25	55.42	Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 ...	[more]

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TCONS_00010103-protein (polypeptide) - C. hemisphaerica