TCONS_00010101-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010101-protein
Unique NameTCONS_00010101-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010101-protein ID=TCONS_00010101-protein|Name=TCONS_00010101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MQSNGDLITMFSSFQQTLDEEKVKREDIKQTVQSIEQKLREMIAILQMIH
HKADEENIKSICAKVSERFPEVLTDLKELADKIPIGQYYKYNQQWSFAMQ
RLVFVLTYVHYLTTEQLMSRELVAGKLNLKLRWEDGFYLDLDDYLIGVLQ
VASELSRLCTNAVIAGDYARPSRIGIFLSDLDAAFRLLNLKNDHLRKRFD
ALKYDLKKVEEIVYDLSVRGLKASSSTDKPASNDSKTSTGETADAEMQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005662XLOC_005662Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010101TCONS_00010101Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002848Translin_fam
IPR016068Translin_N
IPR033956Translin
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003697single-stranded DNA binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016070 RNA metabolic process
molecular_function GO:0003723 RNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003697 single-stranded DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..45
NoneNo IPR availableCOILSCoilCoilcoord: 243..248
NoneNo IPR availableGENE3D1.20.58.200coord: 137..238
e-value: 1.8E-25
score: 88.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..248
IPR002848Translin familyPFAMPF01997Translincoord: 24..220
e-value: 8.5E-53
score: 179.3
IPR002848Translin familySUPERFAMILY74784Translincoord: 8..221
IPR016068Translin, N-terminalGENE3D1.20.58.190coord: 1..136
e-value: 1.9E-36
score: 124.8
IPR033956TranslinCDDcd14819Translincoord: 14..220
e-value: 3.08815E-98
score: 287.506

Blast
[Close]
BLAST of TCONS_00010101-protein vs. Swiss-Prot (Human)
Match: TSN (Translin OS=Homo sapiens GN=TSN PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.089e-73
Identity = 109/217 (50.23%), Postives = 148/217 (68.20%), Query Frame = 0 
Query:   10 MFSSFQQTLDEEKVKREDIKQTVQSIEQKLREMIAILQMIHHKADEENIKSICAKVSERFPEVLTDLKELADKIPIGQYYKYNQQWSFAMQRLVFVLTYVHYLTTEQLMSRELVAGKLNLKLRWEDGFYLDLDDYLIGVLQVASELSRLCTNAVIAGDYARPSRIGIFLSDLDAAFRLLNLKNDHLRKRFDALKYDLKKVEEIVYDLSVRGLKASSS 226
            +F   Q  L  E+  RE+I++ VQS+EQ  RE++ +LQ +H  A  ++I   C K  E F  V T L  L  K P  QYY++++ W F +QRLVF+  +V YL TE L++RE V   L ++   E GF+LD++DYL GVL +ASELSRL  N+V AGDY+RP  I  F+++LD+ FRLLNLKND LRKR+D LKYD+KKVEE+VYDLS+RG    ++
Sbjct:    6 IFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETA 222
The following BLAST results are available for this feature:
BLAST of TCONS_00010101-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN2.089e-7350.23Translin OS=Homo sapiens GN=TSN PE=1 SV=1[more]
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