TCONS_00010094-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010094-protein
Unique Name	TCONS_00010094-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	427

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010094-protein ID=TCONS_00010094-protein|Name=TCONS_00010094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MLFYFVVILFANIFDASSKRSDGQIRKEWNSLLKGYNRHIRPNYTGSATN
VHLTIKIQSFREINERKMSYGIDIWMSQKWEDYRLKHNISKVITPLLGLG
RPSNLIWVPDTVFINEINSKQHLVTVRNNKVDINSDGTVHLISRVTVVAS
CRMNFRFYPLDTQFCYLFIESFAYPDTYVDYNWRVGVIVEKYDLSQYTLE
KVETFKNISKYESGNYTILQVMFRFKRGVEVSVIQVFFPIVSVVCVSMIS
LWLNKYSTSSRVALCVTTLLTLCTLWTRVNFSLPLVSYFKALDWYFLVSF
VFILLVLVEYTIVVNVDTSREKKKVKNAKKEEKRNSLKNASLKETALDSA
RSRKASEAPGAPVNVKEVLKRKRKVKFDDYETGTSRIDRVARFLIPCSYF
MYNIYFWFVFMDERHAYAAEHNRPIHK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005660	XLOC_005660	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010094	TCONS_00010094	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006028	GABAA/Glycine_rcpt
IPR006029	Neurotrans-gated_channel_TM
IPR006202	Neur_chan_lig-bd
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 315..340
None	No IPR available	GENE3D	1.20.58.390		coord: 233..418 e-value: 1.1E-33 score: 115.8
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 71..87 score: 34.55 coord: 105..116 score: 50.26 coord: 151..165 score: 40.87
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 390..410 score: 23.81 coord: 232..252 score: 32.03 coord: 292..313 score: 35.84 coord: 258..279 score: 39.82
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 238..336 e-value: 6.8E-20 score: 72.1
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 233..411
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 30..226 e-value: 1.2E-43 score: 149.0
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 27..228 e-value: 3.8E-50 score: 169.9
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 29..227
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 151..165

Blast

[Close]

BLAST of TCONS_00010094-protein vs. Swiss-Prot (Human)
Match: GBRB1 (Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens GN=GABRB1 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 9.125e-59
Identity = 124/440 (28.18%), Postives = 216/440 (49.09%), Query Frame = 0

Query:   25 IRKEWNSLLKGYNRHIRPNYTGSATNVHLTIKIQSFREINERKMSYGIDIWMSQKWEDYRLKHNISKVITPLLGLGRPSNLIWVPDTVFINEINSKQHLVTVRNNKVDINSDGTVHLISRVTVVASCRMNFRFYPLDTQFCYLFIESFAYPDTYVDYNWRVG----VIVEKYDLSQYTLEKVETFKNISKYESGNYTILQVMFRFKRGVEVSVIQVFFPIVSVVCVSMISLWLNKYSTSSRVALCVTTLLTLCTLWTRVNFSLPLVSYFKALDWYFLVSFVFILLVLVEYTIVVNVDTSREKKKVKNAKKEEKRN-----------------------SLKNASLKETALDSARSRKAS------------------EAPGAPVNVKEVLKRKR--------KVKFDDYETGTSRIDRVARFLIPCSYFMYNIYFWFVFM 411
            +++  + LLKGY+  +RP++ G   +V + I + S   ++E  M Y + ++  Q W+D RL +  S +   L    R ++ +WVPDT F+N+  S  H VTV+N  + ++ DGTV    R+T  A+C M+ R YPLD Q C L IES+ Y    +++ W  G      V K +L Q+++   +      ++ +G Y  L + FR KR +   ++Q + P   +  +S +S W+N  ++++RVAL +TT+LT+ T+ T +  +LP + Y KA+D Y +  FVF+ L L+EY  V  +   +  +K   +K+++  N                        ++N +     L S    KA+                  EA G  ++   V  + R        KVK  D  T  + ID+ +R   P ++ ++N+ +W  ++
Sbjct:   37 VKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSY--SGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYKMVSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTSVSDPKATMYSYDSASIQYRKPLSSREAYGRALDRHGVPSKGRIRRRASQLKVKIPDL-TDVNSIDKWSRMFFPITFSLFNVVYWLYYV 473

The following BLAST results are available for this feature:

BLAST of TCONS_00010094-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010094-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRB1	9.125e-59	28.18	Gamma-aminobutyric acid receptor subunit beta-1 OS...	[more]

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TCONS_00010094-protein (polypeptide) - C. hemisphaerica