TCONS_00010071-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010071-protein
Unique Name	TCONS_00010071-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	406

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010071-protein ID=TCONS_00010071-protein|Name=TCONS_00010071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
SMKKIICTSIKIILSLAFYVRIASSNDAFTSIHDIKQILRKEQVLIEQLD
LSIEQEKARIRKIEQMRDSLKKKVAPITKTSIDEYVGNPLNALYTIRRFN
KDWQRVKDELNNEGFNKVWNDKPELLPTNQDQKGAIGGILRLQNFYKITA
HNISKGILLNNDSEKKPEEMDLGLICTIGDESFKQEDWFLMKEWLDLALE
RIGDSEERDGCKRMWIVDFLSYVEFKLNHFERALKLNYELLAKYYPNEKR
ITDNIENMKSLIKDGSNKPLVKPNDNNYKKLCRGENLRNMTQNEELQMVC
WFKNDQPILRYKPQKIERLWARPEILMFRELLNDEKIGTLINLSLQKLQR
AGLHAETKDQKQYDDSRTSKHAWLYPKDIPLLKQMERRVQTMTNLDMRYA
GKVESL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005648	XLOC_005648	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010071	TCONS_00010071	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013547	Pro_4_hyd_alph_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0004656	procollagen-proline 4-dioxygenase activity
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0004656	procollagen-proline 4-dioxygenase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..73
None	No IPR available	GENE3D	2.60.120.620		coord: 313..404 e-value: 8.0E-7 score: 28.5
IPR013547	Prolyl 4-hydroxylase alpha-subunit, N-terminal	PFAM	PF08336	P4Ha_N	coord: 31..158 e-value: 1.7E-26 score: 92.7

Blast

[Close]

BLAST of TCONS_00010071-protein vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.207e-36
Identity = 106/418 (25.36%), Postives = 201/418 (48.09%), Query Frame = 0

Query:   10 IKIILSLAFYVRIASSNDAFTSIHDIKQILRKEQVLIEQLDLSIEQEKARIRKIEQMRDSLKKKVAPITKTSIDE--YVGNPLNALYTIRRFNKDWQRVKDEL---NNEGFNKVWNDKPELLPTNQDQKGAIGGILRLQNFYKITAHNISKGILLNNDSEKKPEEMDLGLICTIGDESFKQEDWFLMKEWLDLALERIGDSEERDGCKRMWIVDFLSYVEFKLNHFERALKLNYELLAKYYPNEKRITDNIENMKSLIKDGSNKPLVK--------------------PNDNNYKKLCRGENLRNMTQNEELQMVCWFK--NDQPILRYKPQKIERLWARPEILMFRELLNDEKIGTLINLSLQKLQRAGLHAETKDQKQYDDSRTSKHAWLYPKDIPLLKQMERRVQTMTNLDMRYA 400
            +  +L   F V      + FTSI  +  ++  E+ L++ L   I  E+A++ KI+   + ++   A  +K++ D   Y+ +P+NA   ++R N DW  ++D +   +  GF    + + +  PT++D+ GA   ++RLQ+ Y++    IS+G L      K    + +     +G  ++ + D++    W++  L+++   EE    K   ++D+LSY  F+L    RAL+L   LL+   P+ +R   N+   + L+++   K L                      P  + Y+ LCRGE ++ +T   + ++ C +   N  P L   P K E  W  P I+ + ++++DE+I  +  ++  KL RA +             R SK +WL   D P++ ++ RR+Q +T L ++ A
Sbjct:    5 VSALLMAWFGVLSCVQAEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKME---ALTSKSAADAEGYLAHPVNAYKLVKRLNTDWPALEDLVLQDSAAGFIANLSVQRQFFPTDEDEIGAAKALMRLQDTYRLDPGTISRGELPGT---KYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQ-VLDYLSYAVFQLGDLHRALELTRRLLS-LDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELATPEGIYERPVDYLPERDVYESLCRGEGVK-LTPRRQKRLFCRYHHGNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTA 413

The following BLAST results are available for this feature:

BLAST of TCONS_00010071-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010071-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
P4HA2	1.207e-36	25.36	Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie...	[more]

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TCONS_00010071-protein (polypeptide) - C. hemisphaerica