TCONS_00010056-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010056-protein
Unique NameTCONS_00010056-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010056-protein ID=TCONS_00010056-protein|Name=TCONS_00010056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
KKEALKKNNIKMQRKIQLEHVNPFLTCAVCKGYLVDATTIVECLHSFCRG
CIIRHLENSYNCPKCSTEIHKTKPFEYIRSDPSLQEIVYKLVPELYQNEE
TRKEHWKKQEKKDSTKEEGNNRKDDEEENPRILVTLKYFRGTSRMERIKT
ERVLQMFPTRYLCCQPEMPVRVLKKFVQYKFDISTELFKLEMWRGDETLL
DELTLKQLVQIYGLYRERKPLELHYSLLPKFESKTTEESKIKPAIPRPHL
PSSPAFQRTPNDVIEGDKEIEKQEEDDGKFEEKHPTDSTKTNIDTESTIN
EQIGETNNDEESSGLPENPVENPPSVDSNLIKQEDMDVDGSGEQALITSS
STKEQSENPDSVTMPDSQEQKPSIFKNNKTESMDEKLESRESPTDQQVKD
ETETCAVTGADSSETNTSYESCLDTLSSLPDTFDTPMETED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005641XLOC_005641Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010056TCONS_00010056Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR032443RAWUL
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 27..65
e-value: 1.8E-5
score: 34.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 27..66
score: 11.102
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 26..69
e-value: 1.50941E-10
score: 55.5296
IPR032443RAWUL domainPFAMPF16207RAWULcoord: 160..226
e-value: 1.3E-8
score: 35.3
NoneNo IPR availableGENE3D3.10.20.90coord: 126..228
e-value: 5.8E-15
score: 54.9
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 27..65
e-value: 2.4E-10
score: 40.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..441
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 18..74
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..119
e-value: 1.8E-21
score: 75.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 43..52

Blast
[Close]
BLAST of TCONS_00010056-protein vs. Swiss-Prot (Human)
Match: BMI1 (Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.182e-44
Identity = 84/226 (37.17%), Postives = 133/226 (58.85%), Query Frame = 0 
Query:   15 KIQLEHVNPFLTCAVCKGYLVDATTIVECLHSFCRGCIIRHLENSYNCPKCSTEIHKTKPFEYIRSDPSLQEIVYKLVPELYQNE-ETRKEHWKKQEKKDSTKEEGNNRKDDEEENPRIL-------VTLKYF---RGTSRMERIKTERVLQMFPTRYLCCQPEMPVRVLKKFVQYKFDISTELFKLEMWRGDETLLDELTLKQLVQIYGLYRERKPLELHYSLLP 229
            +I++  +NP L C +C GY +DATTI+ECLHSFC+ CI+R+LE S  CP C  ++HKT+P   IRSD +LQ+IVYKLVP L++NE + R++ +      D+      +R +  +E+ RI+       +++++F   R   ++ + K +   ++   RYL C   M V  L+KF++ K DI    F++++   +E L D  TL  +  IY  +R   PL L Y + P
Sbjct:    6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEDKRIITDDEIISLSIEFFDQNRLDRKVNKDKEKSKEEVNDKRYLRCPAAMTVMHLRKFLRSKMDIPNT-FQIDVMYEEEPLKDYYTLMDIAYIY-TWRRNGPLPLKYRVRP 229
The following BLAST results are available for this feature:
BLAST of TCONS_00010056-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMI12.182e-4437.17Polycomb complex protein BMI-1 OS=Homo sapiens GN=... [more]
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