TCONS_00010039-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010039-protein
Unique Name	TCONS_00010039-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	516

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010039-protein ID=TCONS_00010039-protein|Name=TCONS_00010039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MIRCFRNSPHSTTSIKLTDTSLSNMYRTQPYYVNQLKSRNITKSQSALES
YARSLPPIKRFSVDLMYEFWGVDDEDLFGTNTFKPKNRSQFLEQLQKVKE
KFTFSLNDIFGFRSRVDDSKERSIIYGKSCRRNFTEIEGNDLKDFEKYYN
EKNKSDPRFLGAGSSHLPPLNCTPGHYKAYGKVTQGFSWTCLMCKENYFK
SEYGNQPCKKCTGKTSTANKARNACIDPYQEVYINQNSQEFVIVLTLCCI
GFAMTLVVLIIFITKRTTPIVTISDFQISTIHLVDIILIFAISPVIFFIQ
PTNAIHCLFKPILNSSLYVVSIGIIFIKTQKILKAFLSKVIITSREIKKT
TGEQIFTIFVFLGVVNLAFAVSVYYDPAKILKIENSQTLQRNFSCNTYFH
SSIIMGFELIIQLLCSIQAFRGRNLPSVMNESMILVYTTFVLTAVFMATF
AIVPFQKPWYKEIAQCIGIIVNNTVIMVLLYGQKAYRIIRYPAKNTKSYF
RESRMKSMSVQSESVM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005627	XLOC_005627	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010039	TCONS_00010039	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017978	GPCR_3_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.10.50.10		coord: 165..242 e-value: 9.3E-4 score: 19.0
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 253..486 e-value: 7.2E-20 score: 71.7
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 240..504 score: 20.427

Blast

[Close]

BLAST of TCONS_00010039-protein vs. Swiss-Prot (Human)
Match: GRM5 (Metabotropic glutamate receptor 5 OS=Homo sapiens GN=GRM5 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.551e-21
Identity = 111/444 (25.00%), Postives = 184/444 (41.44%), Query Frame = 0

Query:   81 NTFKPKNRSQFLEQLQKVKEKFTFSLNDIFGFRSRVDDSKERSIIYGKSCRRNFTEIEGNDLKDF---EKYYNEKNKSDPRFLGAGSSHL------PPLNCTPGHYKAYGKVTQGFSWTCLMCKEN-YFKSEYGNQPCKKCTGKTSTANKARNACIDPYQEVYINQNSQEFVIVLTLCCIGFAMTLVVLIIFITKRTTPIVTISDFQISTIHLVDIILIFAISPVIFFIQPTNAIHCLFKPILNSSLYVVSIGIIFIKTQKILK--AFLSKVIITSREIKKTTGEQIFTIFVFLGVVNLAFAVSVY-YDPAKILKIENSQTLQRNFSCNTYFHSSII-MGFELIIQLLCSIQAFRGRNLPSVMNESMILVYTTFVLTAVFMATFAIVPFQKPWYKEIAQCIGIIVNNTVIMVLLYGQKAYRIIRYPAKNTKSYFRESRMKSMSV 510
            +  KP +  + LE L  +K  FT    D   F    D      I+       NF E+ G D  D+     + N + K D   + +  S++       P  C  G  K   K      WTC  CKEN Y   EY    CK C   +   +      + P Q  Y+     E +  +   C+G   TL V ++FI  R TP+V  S  ++  I L  I L +  +     I     I+C  + I       +S   +  KT +I +  A   K I T +    +   Q+   F+ +  + L   V+++  +P  I+  +     +    CNT     +  +G+  ++ L C+  AF+ RN+P+  NE+  + +T +    +++A F  + F    YK I  C  + ++ TV +  ++  K Y I+  P +N +S F  S +  M V
Sbjct:  427 DAMKPIDGRKLLESL--MKTNFTGVSGDTILFDENGDSPGRYEIM-------NFKEM-GKDYFDYINVGSWDNGELKMDDDEVWSKKSNIIRSVCSEP--CEKGQIKVIRKGEVSCCWTCTPCKENEYVFDEYT---CKACQLGSWPTDDLTGCDLIPVQ--YLRWGDPEPIAAVVFACLGLLATLFVTVVFIIYRDTPVVKSSSRELCYIILAGICLGYLCT--FCLIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTNRIARILAGSKKKICTKKPRFMSACAQLVIAFILI-CIQLGIIVALFIMEPPDIMH-DYPSIREVYLICNTTNLGVVTPLGYNGLLILSCTFYAFKTRNVPANFNEAKYIAFTMYTTCIIWLA-FVPIYFGSN-YKIITMCFSVSLSATVALGCMFVPKVYIILAKPERNVRSAFTTSTVVRMHV 847

The following BLAST results are available for this feature:

BLAST of TCONS_00010039-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010039-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM5	7.551e-21	25.00	Metabotropic glutamate receptor 5 OS=Homo sapiens ...	[more]

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TCONS_00010039-protein (polypeptide) - C. hemisphaerica