TCONS_00009943-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009943-protein
Unique NameTCONS_00009943-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009943-protein ID=TCONS_00009943-protein|Name=TCONS_00009943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MELFQDPIALSIIGSDDHVLYGCHCDKLKPITKLYYCRHCTKLRCAKCVT
HEVDSFYCPNCLENMPSTEAKIKKNRCANCFDCPSCGHSLSVRATAVSVG
GNPLDESPKTNVKKMHYLNCGFCRWTTRDVGLADQATPSGGWAEPELPFT
KKMSSLLEYYKQLAQQDKAEKARQKITSRRRSNMLIMDRYGYTLSLGKKS
GSISSPNTSILGKTNSASGKEIQAPTIVTTIEQDVEQLPDSFYTEPLCLE
EVLTLDQRLKNPALSATKTKELHPKHKHLKVRRSQRCKRCEHNLCKPEFN
PSSIKFKIQLVGMQYCPLLQIAKSGNFSQGESTQVVLSLSNPLDSAINVT
FMPLNVDDKLNRTQTSDIELPTDTITIAAKDATVEFDGIGSSSMSEQFDD
DPKVIHARSSNKVSFYANVIPNKESGKVVAAFTLNYSYKLITAPLIMKVE
ESLDSEKKKEENIVSLSFPVQVKLGEINATLC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005574XLOC_005574Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009943TCONS_00009943Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008603DCTN4
Vocabulary: Cellular Component
TermDefinition
GO:0005869dynactin complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005869 dynactin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008603Dynactin subunit 4PFAMPF05502Dynactin_p62coord: 30..132
e-value: 2.7E-24
score: 85.7
coord: 248..331
e-value: 4.6E-13
score: 48.7

Blast
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BLAST of TCONS_00009943-protein vs. Swiss-Prot (Human)
Match: DCTN4 (Dynactin subunit 4 OS=Homo sapiens GN=DCTN4 PE=1 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 1.950e-134
Identity = 202/465 (43.44%), Postives = 290/465 (62.37%), Query Frame = 0 
Query:   17 DHVLYGCHCDK--LKPITKLYYCRHCTKLRCAKCVTHEVDSFYCPNCLENMPSTEAKIKKNRCANCFDCPSCGHSLSVRATAVSVGGNPLDESPKTNVKKMHYLNCGFCRWTTRDVGLADQATPSGGWAEPELPFTKKMSSLLEYYKQLAQQDKAEKARQKITSRRRSNMLIM--DRYGYTLSLGKKSGSISSPNTSILGKTNSASGKEIQAPTIVTTIEQDVEQLPDSFYTEPLCLEEVLTLDQRLKNPALSATKTKELHPKHKHLKVRRSQRCKRCEHNLCKPEFNPSSIKFKIQLVGMQYCPLLQIAKSGNFSQGESTQVVLSLSNPLDSAINVTFMPLNVDDKLNRTQTSDIELPTDTITIAAKDATVEFDGIGSSSMSEQFDDDPKVIHARSSNKVSFYANVIPNKESGKVVAAFTLNYSYKLITAPLIMKVEESLDSEKKKEENIVSLSFPVQVKLGEI 477
            D VLY    +K    P+++LY+CR+C++LR  +CV+HEVDS YCP+CLENMPS EAK+KKNRCANCFDCP C H+LS RAT++S      D+  KT +KK +YL CGFCRWT+RDVG+AD++  SGGW EPE P T++M+ L+EYY+QLAQ++K E+ R+K+ +RRR+ M +   D+YG    L +     S    + L        KEI+        E  VE LP+ +YT P+ L EV TL QRL  P        +L+P+HKHL ++RS RC++CEHNL KPEFNP+SIKFKIQLV + Y P ++I    N    + +QV+L+L+NP+++  +VT       D  +   T+ + +P   + +A KDA  E+D +      + F DDP +I  R +NKV  +  V P +E G+V   F + + +K + AP I  +EES      +   ++ L+  V++ LG +
Sbjct:    8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLP--DDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKL-ARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDE--VEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAE---PQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAP-IRPIEES-----DQGTEVIWLTQHVELSLGPL 458
The following BLAST results are available for this feature:
BLAST of TCONS_00009943-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCTN41.950e-13443.44Dynactin subunit 4 OS=Homo sapiens GN=DCTN4 PE=1 S... [more]
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