TCONS_00009723-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009723-protein
Unique NameTCONS_00009723-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009723-protein ID=TCONS_00009723-protein|Name=TCONS_00009723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MADEKDEEKMPDCFQNGCVSFIGQNVKCIPNWLSSKYGSKTIRADFSYNN
LKSVKGLVGFDVLKELVLDNNCLTDDVQFPKLESLETLTANKNNIQNLEL
FMAHIVETLPNLTYLSLLGNTACPNQLSNLDNDEEDYQRYRYYVLYMMPN
LKFLDSTPVSSSERKEALRIGAFTKVVSADTFEDIDEENSSSANEGYTPL
PSSSTMNGEDDHKSTFGKCRYIYYGKHSEGNRFIANNDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005436XLOC_005436Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009723TCONS_00009723Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14580LRR_9coord: 45..168
e-value: 8.4E-9
score: 35.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..211
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 5..177
e-value: 3.7E-16
score: 58.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 39..162

Blast
[Close]
BLAST of TCONS_00009723-protein vs. Swiss-Prot (Human)
Match: LRMDA (Leucine-rich melanocyte differentiation-associated protein OS=Homo sapiens GN=LRMDA PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.673e-63
Identity = 101/191 (52.88%), Postives = 128/191 (67.02%), Query Frame = 0 
Query:   49 NNLKSVKGLVGFDVLKELVLDNNCLTDDVQFPKLESLETLTANKNNIQNLELFMAHIVETLPNLTYLSLLGNTACPNQLSNLDNDEEDYQRYRYYVLYMMPNLKFLDSTPVSSSERKEALRIGAFTKVVSADTFEDIDEENSSSANEGYTPLPSSSTMNGEDDHKSTFGKCRYIYYGKHSEGNRFIANNDL 239
            +N +S++GL  F  L+EL+LDNN L DD+  P L  L TLT NKN I +LE  + H+ E  P L YLSLLGN ACPN+L +L+ DEEDY+RYR +VLY +PNLKFLD+  V+  ER+EAL  G F KVV         E+ +SS    YTPLPS+S       H+   GKCRY+YYGK+SEGNRFI ++ L
Sbjct:   13 SNKRSLEGLSAFRSLEELILDNNQLGDDLVLPGLPRLHTLTLNKNRITDLENLLDHLAEVTPALEYLSLLGNVACPNELVSLEKDEEDYKRYRCFVLYKLPNLKFLDAQKVTRQEREEALVRGVFMKVVKPKAS---SEDVASSPERHYTPLPSAS--RELTSHQGVLGKCRYVYYGKNSEGNRFIRDDQL 198
The following BLAST results are available for this feature:
BLAST of TCONS_00009723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRMDA3.673e-6352.88Leucine-rich melanocyte differentiation-associated... [more]
back to top