TCONS_00009720-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009720-protein
Unique NameTCONS_00009720-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1579

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009720-protein ID=TCONS_00009720-protein|Name=TCONS_00009720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1579bp
MKSAENPFAKVVEKSSIMFSSAHEQAKSTNLFTKVVDNPFSTKIQDQSSL
QIKNEENPFLQRGNEAAPFIPRGNIKSRLGIKKQTPLPGNLIDLTKPSID
NLPITTAAPIGAGNTIELHNVPPKYFAREFLSPFYSEFGTVIKIDLKPFP
RKIAFVTFSNRNSAQKAMSLGTNLDSATVIEITWPTKKKPELKTQPKIQP
KRISTKRHSRKSLDDFKAELQNLAQSLSVVYCPTSLEKYELLDKLDKKIR
EGIRRDPKDYKVLVGTCVDMCPERERYFRNDKNQFSFFENTNGLLDIQKA
VKEYSRSSADQEVPLPHELRTITALDRTMDYLISNIMDVQYSTVSEWFDF
LWNRTRAIRKDITQQNFKCKSSISIVEKCTRFHIFCSHFLCEEEMHVFDT
KINLENMTKCLQTLKHMYEDHWLETNNPCSNEAEFRGYQILLNLNDGDTL
REVMSFSDDIRKSAPVKFALQCFSAVQENNYSRFFKLVKKADFLKACLMH
QYFTQMRAIALKRMARAYVVAKSDLPYPLEDLMSILLFNDYDSASAFCNH
YGFGTDEMYVYLSRSAYLEPEDRYAKERSSIINENCSLTMAEIVNNGPLK
ELPLYHPVDSFDSRGHYIGTYQELSGLPVGDEIAIDEVETEDSQNDEGAT
TVDEDEINDPTYEQQDEEDKGDDIVDGQPQDDYTESEQDDDVIIVEDKDE
KDGDFVPEVSSKHTAKKKNEEEQIMILREDINKASTELVDELIHDVTKNT
FSTLHNQWQENMKEAPHFVEYIIALVSVEDAKNIAVESMEEFKEDKQKEE
GEILEQNAKRASNEIMDSVVKSSLANVCTDVYGEFEVEKQKHIVNDESKH
VQTDIVESTIMEMVTHVANSVVKDTEIEKKTGLLKLKHDYQKSQLSVYFK
QWIKAYKSHMYVKATLNDFPTNAPMVTTEEAIRNLNIREPGEQPKHLQVC
ADVSWLDNERNFKQSVDQFHQKFQKKRDEILKPISFNDILKKSVQNLSWQ
QKPKFHQNQMLTWEMKVIAPNNLGSTNILHSKLTPYILLKKLSTNGLNLE
DQLKQQRDLILQRGTFRTKTNEDVSYRINLVSQGRPIKNLFLATSCICYI
VHNQIFNTQYWQQEHRRLLNYLSSTPSNPHPPLLMLVVIGNPLTINKEQI
EVNLGLDELETRKLIGRWCCAILDDVITDVNVFNESLEKEICAAMMCSRL
FPQITTKPLSTIVEDGLSKLFFPSYHRYCLHCNKSQMPSPNPSDVVLFFN
NVIDEISNMMLNSTINRNDEVTEPPDEASSNAGLFEERCLQLANLVTELK
LPQLPTFNETDDFLLNHQYCAEYVMHFEGIDAATLLNRVNSLLRDHNLSI
GNPDDFIFPWSDVLEFFIVHQLSKMYATSDHSYADGDDISYFSLVNYLPN
VWHGIYVDNPLKNHIKRFNQSARDFDESGLGAQLKRKKFCREVNMQETIH
SINDELSAIEDSMRQRKSRKMSSSSSRDQKSPISELVNQSLLLTRELTNQ
KVERSQRILLYSTLNPNAESFYPQINATISPTYTKQSTNRHLPNVNSLED
SVFNCVKSIDNTHTEWMKRQAYWESVLNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005435XLOC_005435Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009720TCONS_00009720Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005062SAC3/GANP/THP3
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 789..814
NoneNo IPR availableCOILSCoilCoilcoord: 717..737
NoneNo IPR availableCOILSCoilCoilcoord: 1039..1059
NoneNo IPR availableGENE3D3.30.70.330coord: 112..220
e-value: 2.3E-6
score: 27.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 638..691
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1462..1483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 698..717
IPR005062SAC3/GANP/THP3PFAMPF03399SAC3_GANPcoord: 265..555
e-value: 6.6E-108
score: 360.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 124..169
e-value: 9.6E-5
score: 22.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 114..187
score: 10.497
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 114..195

Blast
[Close]
BLAST of TCONS_00009720-protein vs. Swiss-Prot (Human)
Match: GANP (Germinal-center associated nuclear protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2)

HSP 1 Score: 404.06 bits (1037), Expect = 2.014e-115
Identity = 198/392 (50.51%), Postives = 266/392 (67.86%), Query Frame = 0 
Query:  234 TSLEKYELLDKLDKKIREG--IRRDPKDYKVLVGTCVDMCPERERYFRNDKNQFSFFENTNGL--LDIQKAVKEYSRSSADQEVPLPHELRTITALDRTMDYLISNIMDVQYSTVSEWFDFLWNRTRAIRKDITQQNFKCKSSISIVEKCTRFHIFCSHFLCEEEMHVFDTKINLENMTKCLQTLKHMYEDHWLETNNP-CSNEAEFRGYQILLNLNDGDTLREVMSFSDDIRKSAPVKFALQCFSAVQENNYSRFFKLVKKADFLKACLMHQYFTQMRAIALKRMARAYVVA-KSDLPYPLEDLMSILLFNDYDSASAFCNHYGFGTDEMYVYLSRSAYLEPEDRYAKERSSIINENCSLTMAEIVNNGPLKELPLYHPVDSFDSRGHYIG 619
            TS EKY LLD+ D+ +R+    R D    +  VGTC+DMCPE+ERY R  ++Q S FE   G   +D   AVKEYSRSSADQE PLPHELR +  L RTMDYL++ IMD +  ++ +W+DF+WNRTR IRKDITQQ+     ++S++EKCTRFHI C+HF+CEE M  FD KIN ENMTKCLQ+LK MY+D  L      C++EAEF+GY +LL+LN GD LREV  F   +R S+ VKFA+Q F+A+  NN+ RFFKLV+ A +L ACL+H YF+Q+R  AL+ +  AY V+ +    +PL+ ++ +LLF D + A+ F   +G    +  V L+RSA+LEPE      +S  I    ++++ EIVN GPL  +P + PV SF+S+  YIG
Sbjct:  602 TSKEKYRLLDQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDHAAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKINNENMTKCLQSLKEMYQD--LRNKGVFCASEAEFQGYNVLLSLNKGDILREVQQFHPAVRNSSEVKFAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFSQIRKDALRALNFAYTVSTQRSTIFPLDGVVRMLLFRDCEEATDFLTCHGLTVSDGCVELNRSAFLEPEGLSKTRKSVFITRKLTVSVGEIVNGGPLPPVPRHTPVCSFNSQNKYIG 991
The following BLAST results are available for this feature:
BLAST of TCONS_00009720-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GANP2.014e-11550.51Germinal-center associated nuclear protein OS=Homo... [more]
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