TCONS_00009674-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009674-protein
Unique Name	TCONS_00009674-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	315

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009674-protein ID=TCONS_00009674-protein|Name=TCONS_00009674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
ETSRTNFLFSMMCGLIKVLLLLVCVSVVLTAPVKVSQCPKKCTCQLSGTF
VQCPGKVTRKDWERIGAEISENAIQLEVDFLDFEYVQVHCFKKLKSLTNL
RILGGRVVLFPTGLSDKFPALKIITFINNKIRHLTPSIFEGLEEILNLDL
AGNTLKRISKNVFKGLSKLKLLNLERNQIECLDNDAFDGLSGLGLLSLNN
NRLTMLPDGLFKSFKEAPLFLLFANNRITRLQKNLFQPFLKISAFNVSNN
NISEIETGAFDNLLPFPGFGIDLSHNPILCNAQSNPTDFSMGSIRVTGTC
GSTPVLPFQIRRIVE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005410	XLOC_005410	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009674	TCONS_00009674	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 118..141 e-value: 8.5 score: 13.9 coord: 190..213 e-value: 0.0039 score: 26.4 coord: 166..189 e-value: 0.0051 score: 26.0 coord: 239..262 e-value: 65.0 score: 6.6 coord: 142..165 e-value: 13.0 score: 12.4
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 220..290 e-value: 3.8E-5 score: 22.3
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 33..217 e-value: 3.1E-26 score: 91.1
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 40..281
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 147..203 e-value: 5.7E-13 score: 48.3

Blast

[Close]

BLAST of TCONS_00009674-protein vs. Swiss-Prot (Human)
Match: SLIT1 (Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 9.633e-20
Identity = 58/192 (30.21%), Postives = 96/192 (50.00%), Query Frame = 0

Query:   35 VSQCPKKCTCQLSGTFVQCPGKVTRKDWERIGAEISENAIQLEVDFLDFEYVQVHCFKKLKSLTNLRILGGRVVLFPTGLSDKFPALKIITFINNKIRHLTPSIFEGLEEILNLDLAGNTLKRISKNVFKGLSKLKLLNLERNQIECLDNDAFDGLSGLGLLSLNNNRLTMLPDGLFKSFKEAPLFLLFANN 226
             S CP  CTC  +GT V C G       + I   I  N  +LE++  +   +  + F  LK L  L+++  ++     G  D    L+ +    N++  L   +F+  + +  LDL+ N ++ I +  F+G + LK L L++NQI C++  AF  L GL +L+LNNN +T +P   F    +   F L +N+
Sbjct:   31 ASACPALCTC--TGTTVDCHGT----GLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNH 216

HSP 2 Score: 78.9518 bits (193), Expect = 3.568e-16
Identity = 46/132 (34.85%), Postives = 68/132 (51.52%), Query Frame = 0

Query:   95 KSLTNLRILGGRV-VLFPTGLSDKFPALKIITFINNKIRHLTPSIFEGLEEILNLDLAGNTLKRISKNVFKGLSKLKLLNLERNQIECLDNDAFDGLSGLGLLSLNNNRLTMLPDGLFKSFKEAPLFLLFAN 225
            +S   LR+    + +L  TG+  K   LK I   NNK+  +    FEG   +  L L  N L+ I   +F+GL  L+ L L  N+I C+ ND+F GL  + LLSL +N++T +  G F + +      L AN
Sbjct:  540 QSTAELRLNNNEISILEATGMFKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQITTVSPGAFDTLQSLSTLNLLAN 671

The following BLAST results are available for this feature:

BLAST of TCONS_00009674-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009674-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SLIT1	9.633e-20	30.21	Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE...	[more]

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TCONS_00009674-protein (polypeptide) - C. hemisphaerica