TCONS_00009631-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009631-protein
Unique NameTCONS_00009631-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009631-protein ID=TCONS_00009631-protein|Name=TCONS_00009631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp
MESSTLVILLACIVCAAARYEVNLLNALEVDESRSGVQSIDGRYRAYQFY
MYAEEIKAEKEARDELIRDFIRDKEFVFIANVRHDKSTASTLFSMMTESG
KIKFSIWIDADGKKIGIRMHNRNAGKKSITFRNVPIKQSNWHRVVIRFED
TDTSKPTVTLYVDCMEVDKQSFDVSMKETFMEDSLNSELRLNQYQSISGK
DPLKFIGGLQDIMFSFTRKYKFYIDPKWCLNMDVQGTSGLRAHQDPRVVG
GNSGYYGKDIADIQSAVKNMQFQMAAQVNEIRWIRKWIQQCSECKIGEGK
AANLTDRVCTVGKCASDANCNELGNGRHECECKTGFAGNGELCAKDTDKD
GIPDNEIQCEGKKCRKDNCPTFPNSGQEDADKDGKGDACDEDDDNDGILD
EDDNCPFVANPNQNDADGDRKGDACDNCPNTPNNDQRDSDEDGNGDACSR
DSDGDGIRDKSDNCPRVSNIDQLDEDGDSVGDACDNCKTKYNPTQEDTDK
DGVGDVCDSGNDLDKDGIQDDKDNCPYVPNADQLDSDNDGDGDACDDDDD
NDKIVDGDDNCRIIPNPDQKDSDSNGIGDACDPDFDGDGKTKGDVCPENP
NIQNTDFNNYVHIMLDPIGSSX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005375XLOC_005375Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009631TCONS_00009631Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001791Laminin_G
IPR003367Thrombospondin_3-like_rpt
IPR028974TSP_type-3_rpt
IPR013032EGF-like_CS
IPR017897Thrombospondin_3_rpt
IPR000742EGF-like_dom
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 621..621
NoneNo IPR availableGENE3D2.60.120.200coord: 11..225
e-value: 1.2E-14
score: 53.9
IPR001791Laminin G domainSMARTSM00210TSPN_2coord: 21..218
e-value: 7.0E-5
score: 11.9
IPR003367Thrombospondin, type 3-like repeatPFAMPF02412TSP_3coord: 474..495
e-value: 0.019
score: 14.6
coord: 378..413
e-value: 6.6E-12
score: 44.8
coord: 535..569
e-value: 3.2E-5
score: 23.4
coord: 570..603
e-value: 2.8E-9
score: 36.4
coord: 496..533
e-value: 1.9E-11
score: 43.3
coord: 437..472
e-value: 1.4E-12
score: 46.9
IPR028974TSP type-3 repeatGENE3D4.10.1080.10coord: 488..607
e-value: 1.7E-27
score: 95.3
coord: 295..421
e-value: 4.3E-20
score: 71.3
coord: 422..487
e-value: 7.1E-17
score: 60.9
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 319..426
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 483..602
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 415..485
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 330..343
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 570..604
score: 13.265
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 345..377
score: 11.861
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 378..413
score: 18.373
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 414..436
score: 11.94
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 437..472
score: 16.19
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 473..495
score: 10.833
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 496..533
score: 17.2
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 534..569
score: 17.327
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 305..344
score: 10.742
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 22..214

Blast
[Close]
BLAST of TCONS_00009631-protein vs. Swiss-Prot (Human)
Match: COMP (Cartilage oligomeric matrix protein OS=Homo sapiens GN=COMP PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 3.880e-84
Identity = 185/339 (54.57%), Postives = 225/339 (66.37%), Query Frame = 0 
Query:  290 QCSECKIG-----EGKAANLTDRVCTVG---KCASDANCNELGNGRHECECKTGFAGNGELCAKDTDKDGIPDNEIQCEGKKCRKDNCPTFPNSGQEDADKDGKGDACDEDDDNDGILDEDDNCPFVANPNQNDADGDRKGDACDNCPNTPNNDQRDSDEDGNGDACSRDSDGDGIRDKSDNCPRVSNIDQLDEDGDSVGDACDNCKTKYNPTQEDTDKDGVGDVCDSGNDLDKDGIQDDKDNCPYVPNADQLDSDNDGDGDACDDDDDNDKIVDGDDNCRIIPNPDQKDSDSNGIGDACDPDFDGDGKT-KGDVCPENPNIQNTDFNNYVHIMLDPIG 619
            QC  C+ G              R C  G   +C   A+C    +G   C C  G+AGNG LC +DTD DG PD +++C  ++CRKDNC T PNSGQED D+DG GDACD D D DG+ +E DNCP V NP+Q + D D+ GDACDNC +  N+DQ+D+D+DG GDAC  D DGD IR+++DNCPRV N DQ D DGD +GDACDNC  K NP Q D D D VGD CDS  D D DG QD +DNCP VPN+ Q DSD+DG GDACDDDDDND + D  DNCR++PNP Q+D+D +G+GD C  DFD D    K DVCPEN  +  TDF  +  ++LDP G
Sbjct:  205 QCGPCQPGFVGDQASGCQRRAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEKLRCPERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDSDGDGIGDACDNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQDDFDADKVVDKIDVCPENAEVTLTDFRAFQTVVLDPEG 543
The following BLAST results are available for this feature:
BLAST of TCONS_00009631-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMP3.880e-8454.57Cartilage oligomeric matrix protein OS=Homo sapien... [more]
back to top