TCONS_00009384-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009384-protein
Unique NameTCONS_00009384-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009384-protein ID=TCONS_00009384-protein|Name=TCONS_00009384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MAYQQQQQQQFGQPIDQNFLWNIFQKVDKDRSGTITHVELQQALSNGTWA
PFNPETIRLMIGMFDKDRNGTITFQEFGALWKYVTDWQQCFRGFDRDNSG
SIDKNELKQALTSFGYRLSDKFYDILVKKFDRSNRGSITFDDFIQCCVAL
QNITNTFQQYDTQRSGWIQLQYEQFLSAGFNLKT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005253XLOC_005253Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009384TCONS_00009384Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 19..47
e-value: 2.0
score: 15.3
coord: 122..150
e-value: 70.0
score: 2.9
coord: 56..84
e-value: 0.0011
score: 28.2
coord: 86..114
e-value: 2.0E-5
score: 34.0
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 87..145
e-value: 2.2E-10
score: 40.8
coord: 23..78
e-value: 7.6E-10
score: 39.0
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 52..80
score: 7.651
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 15..50
score: 11.529
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 82..117
score: 13.928
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 118..153
score: 8.99
IPR002048EF-hand domainCDDcd00051EFhcoord: 88..145
e-value: 4.8916E-11
score: 54.0909
IPR002048EF-hand domainCDDcd00051EFhcoord: 23..77
e-value: 4.65488E-11
score: 54.0909
NoneNo IPR availableGENE3D1.10.238.10coord: 106..135
e-value: 2.6E-17
score: 62.0
NoneNo IPR availableGENE3D1.10.238.10coord: 35..68
e-value: 4.5E-14
score: 52.0
NoneNo IPR availableGENE3D1.10.238.10coord: 69..105
e-value: 1.5E-12
score: 46.7
NoneNo IPR availableGENE3D1.10.238.10coord: 136..183
e-value: 4.1E-7
score: 29.1
NoneNo IPR availableGENE3D1.10.238.10coord: 3..34
e-value: 9.1E-5
score: 21.8
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 28..40
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 95..107
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 20..177

Blast
[Close]
BLAST of TCONS_00009384-protein vs. Swiss-Prot (Human)
Match: PDCD6 (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.076e-82
Identity = 107/167 (64.07%), Postives = 134/167 (80.24%), Query Frame = 0 
Query:   16 DQNFLWNIFQKVDKDRSGTITHVELQQALSNGTWAPFNPETIRLMIGMFDKDRNGTITFQEFGALWKYVTDWQQCFRGFDRDNSGSIDKNELKQALTSFGYRLSDKFYDILVKKFDRSNRGSITFDDFIQCCVALQNITNTFQQYDTQRSGWIQLQYEQFLSAGFNL 182
            DQ+FLWN+FQ+VDKDRSG I+  ELQQALSNGTW PFNP T+R +I MFD++    + F EF  +WKY+TDWQ  FR +DRDNSG IDKNELKQAL+ FGYRLSD+F+DIL++KFDR  RG I FDDFIQ C+ LQ +T+ F++YDT + GWIQ+ YEQ+LS  F++
Sbjct:   24 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 190
The following BLAST results are available for this feature:
BLAST of TCONS_00009384-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCD64.076e-8264.07Programmed cell death protein 6 OS=Homo sapiens GN... [more]
back to top