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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00009285-protein ID=TCONS_00009285-protein|Name=TCONS_00009285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=574bp
MESLQDAQPQPSGPAEESQAPKAQGLSTISNSDDPTSNVIDYIQKQVESA
VYEINKITGVKTENDVVFYNVQWVAHTWIPESILSQFNHFIERFWQENGG
REKFIKSQKEPILVTEHVIEEGQNGQQKDESDPSIQEQDLGVSNAEEHFE
TTCSKCDQVFYLKSNWDLHIMFCGKETRQEMTISDATSNSQLDSETVSAV
STISEAPPKAVARSFELIPLVEPADCESCTKRMPTIHSAAGGNIDNEKLL
FNATKKSISEDVEIFECQECKRDFLCKHPVDENLVLASALQANDTVAADA
IFNKKFRPYSCPICNRSFESANEMYQHEVKHSNTNRRYSCAKCHMKFVTR
SSLQEHYNTSKNGCAPKKCQLCSKEFVHASHLKRHMTNVHIGVKPFGCDI
CSHEFSQKSDLQRHEKRHKIEGRYTCVKCWLMYDTIEELREHCNERHQKG
SKKAPAPEQTFKCEMCPKSFKRKSHYTRHLTIHSGIKPHSCEHCGKSFNQ
KSDLKRHVQTHERRKEKDGIPQQDFEMDDGTEGEGEPPFICSICSRSFNQ
KLLLDSHMTVTHERMMGAGVSFLK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 489..511
e-value: 1.9E-4
score: 30.8
coord: 539..562
e-value: 0.0042
score: 26.3
coord: 424..447
e-value: 2.9
score: 16.9
coord: 461..483
e-value: 0.0016
score: 27.7
coord: 151..171
e-value: 180.0
score: 2.1
coord: 367..390
e-value: 0.051
score: 22.7
coord: 338..358
e-value: 20.0
score: 10.7
coord: 396..418
e-value: 0.012
score: 24.8
coord: 309..331
e-value: 0.0015
score: 27.8 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 491..511 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 541..562 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 463..483 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 311..331 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 398..418 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 369..390 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 338..366
score: 9.702 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 461..488
score: 14.627 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 367..395
score: 13.214 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 396..423
score: 11.136 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 539..562
score: 9.889 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 489..516
score: 13.983 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 309..336
score: 10.762 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 366..418 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 534..564 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 460..511 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 307..357 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 379..408
e-value: 2.6E-13
score: 49.7
coord: 409..443
e-value: 5.4E-10
score: 39.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 444..472
e-value: 3.5E-6
score: 26.6 |
| None | No IPR available | GENE3D | 2.40.50.40 | | coord: 41..124
e-value: 1.5E-5
score: 24.2 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 398..418
e-value: 0.0038
score: 17.5
coord: 539..562
e-value: 0.007
score: 16.7
coord: 461..483
e-value: 4.4E-5
score: 23.6
coord: 489..511
e-value: 1.6E-5
score: 25.0
coord: 368..390
e-value: 0.0039
score: 17.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 318..348
e-value: 9.4E-10
score: 38.2
coord: 349..378
e-value: 4.6E-9
score: 36.0
coord: 150..270
e-value: 0.0095
score: 15.8
coord: 473..497
e-value: 6.4E-16
score: 58.0 |
| None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 309..331
e-value: 0.0013
score: 19.3 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 271..317
e-value: 7.9E-6
score: 25.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 498..524
e-value: 2.6E-9
score: 36.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 509..534 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..37 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 531..566
e-value: 9.2E-5
score: 21.9 |
| IPR016197 | Chromo domain-like | SUPERFAMILY | 54160 | Chromo domain-like | coord: 46..103 |
Blast
BLAST of TCONS_00009285-protein vs. Swiss-Prot (Human)
Match: ZN358 (Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 7.762e-37 Identity = 105/395 (26.58%), Postives = 166/395 (42.03%), Query Frame = 0
Query: 182 TISDATSNSQLDSETVSA-VSTISEAP------PKAVARSFEL-------IPLVEPADCESCTKRMPTIHSAAGGNIDNEKLLFN--ATKKSISEDVEIFECQECKRDFLCKHPVDENLVLASALQANDTVAADAIFNKKFRPYSCPICNRSFESANEMYQHEVKHSNTNRRYSCAKCHMKFVTRSSLQEHYNTSKNGCAPKKCQLCSKEFVHASHLKRHMTNVHIGVKPFGCDICSHEFSQKSDLQRHEKRHKIEGRYTCVKCWLMYDTIEELREHCNERHQKGSKKAPAPEQTFKCEMCPKSFKRKSHYTRHLTIHSGIKPHSCEHCGKSFNQKSDLKRHVQTHERRKEKDGIPQQDFEMDDGTEGEGEPPFICSICSRSFNQKLLLDSHMTV 560
T+ + S D E VS + +EAP P ++ SF+L +PL+ + ++ + P + + G ++L A + + F C +C R F + + ++ + +PY CP C +SF + QH H+ R Y CA C F RS+L +H +S +G P C +C K F H S L +H+ H G +P C +C+ F Q S L +H + H E Y C +C + L +H H E+ ++C C K+F + S+ HL IH+G +P++C HC K+F Q S L +H+ H GE P+ C +C ++F Q L H V
Sbjct: 52 TVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLSPGDPKVDPISSGLTATPQVLATSPAVLPAPASPPRPFSCPDCGRAF----------------RRSSGLSQHRRTHSGEKPYRCPDCGKSFSHGATLAQHRGIHTGA-RPYQCAACGKAFGWRSTLLKH-RSSHSGEKPHHCPVCGKAFGHGSLLAQHL-RTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQH-QRTHTA--------ERPYRCPHCGKAFGQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHLHVH----------------------SGERPYRCQLCGKAFGQASSLTKHKRV 396
The following BLAST results are available for this feature:
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