TCONS_00009132-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00009132-protein
Unique Name	TCONS_00009132-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	603

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00009132-protein ID=TCONS_00009132-protein|Name=TCONS_00009132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MSVSNQSDFLTSFSDDDNDIDDAINASPVHEISYEGTLSKWTNYLHGWQS
RFLTLQDGTLSYYKSKFDTGYGCRGSVSVAKASIEVHEFDNCRFDVNVGD
CVYYLRADEPTEKQNWVEILESAKQAESGYGSEPHLPKAVSTLSLSSQPS
LRSSSSFQKSAGLREKLMEMETFRDILCRQTDTLQTYFDSCADGNAGNNS
TQKLDLEEEDEDIDDMAATPTPSSFIRGGSTTTANPSHAIDFRGEAITFK
ATTAGVIQVLSHCIDLMTKREEQWKRKLEREQEKIRKLKEQLKDKPSIDM
ADNQFSGPDFMEGPNMKLNEEQFFDAVDTALDVEDENDDDLDNIDKENIP
PPKPTSEIMSAPKHKYSKMLETKVKENLVLIQEQVEAENTEWYNVYEDGD
LKVYRKDVEIEGLVCDPLKASHIIHGVSGHEMCHYFFDKDVRLDWEVTVE
KVKMIEKLSENTAIFQQIHKRIWPSAQRDTCFISHIRQLGKEDNVERMDK
EVERPWTVQNISMEHEKVPNDKFVRAVANVVMLCQTYTIGDVKKKKYTRE
NIACKLTYMAQVNPGGWAPASAIRQVAKREYPKFLRKFSSYVQTVTADKP
LML

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005117	XLOC_005117	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00009132	TCONS_00009132	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002913	START_lipid-bd_dom
IPR001849	PH_domain
IPR011993	PH_dom-like
IPR023393	START-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008289	lipid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 264..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 336..359
None	No IPR available	CDD	cd13283	PH_GPBP	coord: 35..133 e-value: 9.83067E-55 score: 181.331
None	No IPR available	SUPERFAMILY	55961	Bet v1-like	coord: 382..593
IPR002913	START domain	SMART	SM00234	START_1	coord: 371..598 e-value: 3.2E-4 score: 30.0
IPR002913	START domain	PFAM	PF01852	START	coord: 382..595 e-value: 4.4E-24 score: 85.0
IPR002913	START domain	PROSITE	PS50848	START	coord: 381..597 score: 25.437
IPR001849	Pleckstrin homology domain	SMART	SM00233	PH_update	coord: 32..127 e-value: 3.1E-15 score: 66.6
IPR001849	Pleckstrin homology domain	PFAM	PF00169	PH	coord: 34..124 e-value: 6.4E-10 score: 39.4
IPR001849	Pleckstrin homology domain	PROSITE	PS50003	PH_DOMAIN	coord: 31..125 score: 11.985
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 26..129 e-value: 5.9E-18 score: 64.3
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 28..131
IPR023393	START-like domain	GENE3D	3.30.530.20		coord: 264..600 e-value: 4.8E-37 score: 127.2

Blast

[Close]

BLAST of TCONS_00009132-protein vs. Swiss-Prot (Human)
Match: C43BP (Collagen type IV alpha-3-binding protein OS=Homo sapiens GN=COL4A3BP PE=1 SV=1)

HSP 1 Score: 511.531 bits (1316), Expect = 1.742e-175
Identity = 270/611 (44.19%), Postives = 383/611 (62.68%), Query Frame = 0

Query:   36 GTLSKWTNYLHGWQSRFLTLQDGTLSYYKSKFDTGYGCRGSVSVAKASIEVHEFDNCRFDVNVGDCVYYLRADEPTEKQNWVEILESAKQAESGYGSEPHLPKAVSTLSL---SSQPSLRSSSSFQKSAGLREKLMEMETFRDILCRQTDTLQTYFDSCADGNAGNNSTQKLDLEEEDEDIDDMAATPTPSS---FIRGGST--------TTANPSHAIDFRGEAITFKATTAGVIQVLSHCIDLMTKREEQWKRKLEREQEKIRKLKEQLKDKPSIDMADNQFSGPDFMEGPNMKLNEEQFFDAVDTALDVEDENDDDLDNID-KENIPPPKPTSEIMSAPK---------------------------HKYSKMLETKVKENLVLIQEQVEAENTEWYNVYEDGDLKVYRKDVEIEGLVCDPLKASHIIHGVSGHEMCHYFFDKDVRLDWEVTVEKVKMIEKLSENTAIFQQIHKRIWPSAQRDTCFISHIRQLGKEDNVERMDKEVERPWTVQNISMEHEKVP-NDKFVRAVANVVMLCQTYTIGDVKKKKYTRENIACKLTYMAQVNPGGWAPASAIRQVAKREYPKFLRKFSSYVQTVTADKPLML 603
            G LSKWTNY+HGWQ R++ L++  LSYYKS+ +T YGCRGS+ ++KA I  H+FD CRFD++V D V+YLRA +P  +Q W++ +E  K  ESGYGSE  L +  S +SL   +S  S  S+SSF+K   LREKL EMETFRDILCRQ DTLQ YFD+CAD      +  K +L+ +    DD    PT  S   F+   +          T    + IDF+GEAITFKATTAG++  LSHCI+LM KRE+ W+++L++E EK R+ +E  K+  +     + F GPD+ EGPN  +NEE+FFDAV+ ALD +D+ ++   +   + + P   P+ +  S+                             H++S  +E  V+ ++    + V  +   W  V E+G++KVYR++VE  G+V DPLKA+H + GV+GHE+C+YF++ DVR DWE T+E   ++E L++N  I  Q HKR+WP++QRD  ++S IR++     +   D E    W V N S++H+  P N++ VRA  NV M+CQT        ++ +R+NI CK+TY+A VNPGGWAPAS +R VAKREYPKFL++F+SYVQ  TA KP++ 
Sbjct:   28 GVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK-TESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACAD------AVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGD-ANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPA---LTENDPET---WIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF 624

The following BLAST results are available for this feature:

BLAST of TCONS_00009132-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00009132-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C43BP	1.742e-175	44.19	Collagen type IV alpha-3-binding protein OS=Homo s...	[more]

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TCONS_00009132-protein (polypeptide) - C. hemisphaerica