TCONS_00009086-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009086-protein
Unique NameTCONS_00009086-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009086-protein ID=TCONS_00009086-protein|Name=TCONS_00009086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MSDDDFMDDDEEYDLEYSTDDNSEPDVDLENQYYNSKALKEEDPDEAIKS
FEKVLELEQEKGEWGFKALKQMVKINYKLQKYGNMMTRYKELLTYIKTAV
TRNHSEKSINSILDFISTSNQITLLQEFYETTLDALKDAKNERLWFKTNC
KLGKLYYDREDFSRLSRIIKELRKSCQTNDGEEDLKKGTQLLEIYALEIQ
MYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRECGGKMHLREEEYEN
AATDFFEAFKNYDESGSQRRITCLKYLVLAYMLMKSDINPFDSQEAKPYK
NDADILAMTNLVSAYQNNDISEFEKILKLNRNTIMDDPFIREHIEDLLGN
VRTQVLVKLIKPYTKIHIPFISKELNIDTTEVESLLVQCILDSTIQGRID
QEHQLLELEKKTAGTARFAALDKWTTTLGNLHLNVCNKIA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005093XLOC_005093Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009086TCONS_00009086Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011990TPR-like_helical_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 342..424
e-value: 1.0E-18
score: 78.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 342..424
e-value: 1.0E-18
score: 78.2
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 307..410
e-value: 2.7E-24
score: 85.6
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 32..109
e-value: 6.5E-4
score: 19.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 134..339
e-value: 1.0E-5
score: 24.2
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 340..417
e-value: 9.8E-18
score: 63.5
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 336..411

Blast
[Close]
BLAST of TCONS_00009086-protein vs. Swiss-Prot (Human)
Match: CSN2 (COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1 SV=1)

HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 348/443 (78.56%), Postives = 394/443 (88.94%), Query Frame = 0 
Query:    1 MSD--DDFM-DDDEEYDLEYSTDDNSEPDVDLENQYYNSKALKEEDPDEAIKSFEKVLELEQEKGEWGFKALKQMVKINYKLQKYGNMMTRYKELLTYIKTAVTRNHSEKSINSILDFISTSNQITLLQEFYETTLDALKDAKNERLWFKTNCKLGKLYYDREDFSRLSRIIKELRKSCQTNDGEEDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRECGGKMHLREEEYENAATDFFEAFKNYDESGSQRRITCLKYLVLAYMLMKSDINPFDSQEAKPYKNDADILAMTNLVSAYQNNDISEFEKILKLNRNTIMDDPFIREHIEDLLGNVRTQVLVKLIKPYTKIHIPFISKELNIDTTEVESLLVQCILDSTIQGRIDQEHQLLELEKKTAGTARFAALDKWTTTLGNLHLNVCNKIA 440
            MSD  DDFM DD+E+YDLEYS D NSEP+VDLENQYYNSKALKE+DP  A+ SF+KVLELE EKGEWGFKALKQM+KIN+KL  +  MM RYK+LLTYI++AVTRN+SEKSINSILD+ISTS Q+ LLQEFYETTL+ALKDAKN+RLWFKTN KLGKLY +RE++ +L +I+++L +SCQT+DGE+DLKKGTQLLEIYALEIQMYTAQKNNKKLK LYEQSLHIKSAIPHPLIMGVIRECGGKMHLRE E+E A TDFFEAFKNYDESGS RR TCLKYLVLA MLMKS INPFDSQEAKPYKND +ILAMTNLVSAYQNNDI+EFEKILK N + IMDDPFIREHIE+LL N+RTQVL+KLIKPYT+IHIPFISKELNID  +VESLLVQCILD+TI GRIDQ +QLLEL+ +  G AR+ ALDKWT  L +L+  V +K+A
Sbjct:    1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
The following BLAST results are available for this feature:
BLAST of TCONS_00009086-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN20.000e+078.56COP9 signalosome complex subunit 2 OS=Homo sapiens... [more]
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