TCONS_00008739-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008739-protein
Unique NameTCONS_00008739-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008739-protein ID=TCONS_00008739-protein|Name=TCONS_00008739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSKQASFRDNKKVSGELFTLTYGALVSQLVKDYESDEDVNRQLERMGYNI
GVRLIEDFLARSNTGRCNDFRETADVISKQGFKTFLGITPQVTNWNAAGD
EFSLIFESNPLAEFVELPEGHSNLWYSSLLVGVIKGALEMVQMEVDAAFV
QDVLRGDTQTEMRVRFIKKLEDAVPVGEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004901XLOC_004901Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008739TCONS_00008739Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR016721Bet3
IPR024096NO_sig/Golgi_transp_ligand-bd
Vocabulary: Biological Process
TermDefinition
GO:0048193Golgi vesicle transport
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0030008 TRAPP complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 18..164
e-value: 1.0E-36
score: 125.7
IPR016721Bet3 familyPIRSFPIRSF018293TRAPP_1_Bet3coord: 1..179
e-value: 8.7E-84
score: 277.2
IPR016721Bet3 familyCDDcd14942TRAPPC3_bet3coord: 14..168
e-value: 3.83558E-103
score: 295.188
NoneNo IPR availableGENE3D3.30.1380.20coord: 12..170
e-value: 1.4E-56
score: 189.8
IPR024096NO signalling/Golgi transport ligand-binding domainSUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 11..169

Blast
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BLAST of TCONS_00008739-protein vs. Swiss-Prot (Human)
Match: TPPC3 (Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.606e-94
Identity = 126/180 (70.00%), Postives = 157/180 (87.22%), Query Frame = 0 
Query:    1 MSKQASF-RDNKKVSGELFTLTYGALVSQLVKDYESDEDVNRQLERMGYNIGVRLIEDFLARSNTGRCNDFRETADVISKQGFKTFLGITPQVTNWNAAGDEFSLIFESNPLAEFVELPEGHSNLWYSSLLVGVIKGALEMVQMEVDAAFVQDVLRGDTQTEMRVRFIKKLEDAVPVGEE 179
            MS+QA+   ++KK+S ELFTLTYGALV+QL KDYE+DEDVN+QL++MG+NIGVRLIEDFLARSN GRC+DFRETADVI+K  FK +LGITP +TNW+ AGDEFSLI E+NPL +FVELP+ HS+L YS+LL GV++GALEMVQM V+A FVQD L+GD  TE+R+RFI+++ED +P GEE
Sbjct:    1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
The following BLAST results are available for this feature:
BLAST of TCONS_00008739-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPPC33.606e-9470.00Trafficking protein particle complex subunit 3 OS=... [more]
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